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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5520_PI390587928Hv_44K_v2TTTGATGTTGGTCCGTGCTGTAAATTGCCAAACAATGGTGTTTGCATCATGGCATCGCTG2080GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0751.1031.2931.6520.6800.640
Raw 2002.4833335.8503314.6236862.697966.926997.812



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3712187602e-24432 - 49110060 / 60plus ABC33956 ABC44374
MLOCMLOC_61892.18483e-2125 - 849758 / 60plus ABC33956 ABC44374
JLOC1JLOC1_40468.15022e-2125 - 849758 / 60plus
Harvest21ABC0231624513e-252081 - 214010060 / 60plus
Harvest21ABC0231712556e-22909 - 9689758 / 60plus
Harvest35U35_1484024513e-252081 - 214010060 / 60plus



Contig Sequence (2451 bp)

>U35_14840 2451 Hv_44K_v2
GCTGGCTTCCCCGGTTCTTCCCCGTTTTTGATCTGAGTCACTCATGTCTTTTGAAGTCAG
CGAGGGATCCCCTTATTTCCTCTCGTGCTACTTCTGGTTCATATATTGCATAAAATTCCG
AGATTTCACTTGATACAAGTGGAACATCTGGAGTTTTGTGCGAATACTTCCTATCATGTG
AATCAGTGGTAGTTGGTTTAATTGGCAAGACTCAAACTTCTCTCATCTCAGTTCAGAAAC
ATTTGTCGCTTGAGTCCTTGGTTTACTGCTTTCCTTGAGTCTTGCCAAGCCTGGTTTCCC
ATCAGTTGCGTCTCCTCAAGCTTTCGGTTGGACCATTCTCTCCTCTGGTCTAATCTCATC
AATCCTTTGATTGATCCTCCCTTCAGAATAGTTGTCATAACGTGAGCTCTCCTACTCTGC
TCACACTGCAATATTCTGAAGCTCTCTTCTCTGGATCTTGTTTGCTCTCTTGAGAGCTCC
TCTCTCCTTAAGTTTGGTTGACCTGTGGCCTTGAATTCTGTCTTTTGAGGACCGAAGCAT
TCAACTTTCTGGCCAAACTTGATATTTTCCTGATTTACTGGTATTGTTAATTGCATAATC
TGGTGAAGCAATTCTGGTTGTGTTTCACCTCTTGTGTTCTTCTGTTGATACTGAGCACAA
GACACCCACTGCAGTGATGGCTCAAACTTGCCTGCCACCTGGCTTTCGTTTCCATCCAAC
AGATGTTGAGCTTGTTTCTTACTACTTGAAAAGGAAGATTATGGGGAAGAAACTTTTTGT
TGAAGCTATCTCAGAGGTTGAGCTGTACAAATTTGCTCCTTGGGACCTTCCTGATAAATC
CTGTCTCCAGAGCAAAGATCTTGAGTGGTTCTTCTTTTGCCCCCGTGACAAAAAATATCC
TAAAGGGTCTAGGACGAACCGTGCCACACCAAATGGTTATTGGAAAACAAGTGGAAAAGA
CAGAACAATTGAGCTGAACTCTCGCATTGTTGGGTTGAAGAAGACATTGATTTTTCATGA
AGGCAAAGCCCCCAAAGGCAACAGGACAGATTGGGTGATGTATGAATACAAAATGGAAGA
TGAAACTTTGGATGCTGCTGGTTTCTCAAAGGATGCTTATGTGCTCTGCAAGATATTTAA
AAAGAGTGGGCTTGGCCCAAGGATTGGTGAGCAATATGGGGCTCCTTTTGATGAAAATGA
ATGGGAGAATTTGGATGTTGGAAGTTCTATCTTCTCTTTTGCACCCTCGTCCGGTGTAGA
GGATCCACAAGTCGAAAGTTCTGCCTTGGCTACTGCAGTTATTCAGGAACCATTCGCGCC
TCAGCAGTCTGTTCAATTTTCTGAACATGTTAATATCTGTTCTAATGAGGACAATAATGC
GCCTCCTGAAATTGATGGAATTTGGTTGGAAGAACTGGCATTGTTTTTGAATGATTCTCC
CAACCATGACATAGCTTTGCCTGAGAATTCTGGTCTCCCTCCAATGTCTGAGCTTGAGGC
TCAAGCTTTTGAGATGAATACTGCTGAGCTCTATGATCAATTAGCAGGACTTGCCCAGTC
AGGGGATATGTGTAATGTAAACTTCCCTGCTGGCGACGTGGGTGTTACTGAAAATGATTT
CCAGCAATCAAACTCTGGATTTGCTATGGATGATGATTATATAGAGCTGGATGATCTGTT
TGCTCCTGGGGAAACCTTCTCTTATGATTTTTCTGGTGAAACCTTCTCCTATGATTTGAC
TGGTGGAACCTTCTCCTATGATTTGTCTGTGCCAAACAATCAGTTTTTGCAGTACCCATT
GGATCAATCAACTAATGGCAGTCACTACGGTGATGGTGCTACTCAATCAACTTTTGAAGC
AAGTGGATCGCTTCCACCAATGCCTAGCACTTTTGATGACATGCCTTCTGTTTCCAATAA
GCCTGCAAACTCCAATTGCTTGAACCCAACCATGAAAGACCCATTCTCTTAGACAGCAAC
TTTTGAGGTATAAGTCTGTTATCTTTGGTCATTGCTCTTGGAAGTTGCTGCTGTTTCTGG
TTTGGTTGTCCAATCATTGTCTGATGCGACTATTGATGCCTTTGATGTTGGTCCGTGCTG
TAAATTGCCAAACAATGGTGTTTGCATCATGGCATCGCTGCTGCTCTTTTGAAGAAGCCG
GAACTTGGTTGTGTCTCAATCACGACCACAATACTGGACAAGCGACCGAGCTTACTGCTT
TTCTGCGGAGAAACTGTTTTCTGCTGGTTTGGAAGATGTCTTATCTGGATGGATATGCTG
CCGTCCACCGTAGATCTTTCTGTAATAACTTGATGACAACTTCGTAGCTTAAGTCCATCT
TTTATCTATATATTCTGTCAAAGCAATACTTTTGAACCATCTTCATTACTATTATTATTA
TATTAAAAAAAAAAAAAAAAAGTGTGTTTTGTTGAAAAAAAAAAAAAAAAA



Homology of Contig U35_14840 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g35170.14505e-152protein|no apical meristem protein, putative, expressed
Brachypodium v1_2Bradi2g24790.14650.0
Arabidopsis v10AT5G64060.13563e-76| Symbols: anac103, NAC103 | NAC domain containing protein 103 | chr5:25633818-25635152 REVERSE LENGTH=356