barSeed - Barley Seed Development Database

Probe CUST_5519_PI390587928

Source Contig U35_14841

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5519_PI390587928	Hv_44K_v2	TTATGCAAACAGGGCCAACTACTGTTGCGTCAAGGTCTGCTTATGCAGAATTTGGGAAGA	886	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.395	1.086	1.266	1.102	0.661	0.678
Raw	134.153	143.624	165.094	217.369	48.525	53.815

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52975.2	282	7e-23	2 - 61	98	59 / 60	minus	None
MLOC	MLOC_52975.1	446	7e-23	285 - 344	98	59 / 60	minus	None
Harvest21	ABC41765	471	3e-25	276 - 335	100	60 / 60	plus
Harvest21	ABC41764	499	1e-23	277 - 336	98	59 / 60	plus
Harvest35	U35_14841	1082	3e-25	887 - 946	100	60 / 60	plus
Harvest35	U35_44211	499	1e-23	277 - 336	98	59 / 60	plus

Contig Sequence (1082 bp)

>U35_14841 1082 Hv_44K_v2
GTCCTGCTGGCTTCCCCGGTTCTTCCCCGTTTTTGATCTGAGTCACTCATGTCTTTTGAA
GTCAGCGAGGGATCCCCTTATTTCCTCTCGTGCTACTTCTGGTTCATATATTGCATAAAA
TTCCGAGATTTCACTTGATACAAGTGGAACATCTGGAGTTTTGTGCGAATACTTCCTATC
ATGTGAATCAGTGGTAGTTGGTTTAATTGGCAAGACTCAAACTTCTCTCATCTCAGTTCA
GAAACATTTGTCGCTTGAGTCCTTGGTTTACTGCTTTCCTTGAGTCTTGCCAAGCCTGGT
CTCCCTCCAATGTCTGAGCTTGAGGCTCAAGCTTTTGAGATGAATACTGCTGAGCTCTAT
GATCAATTAGCAGGACTTGCCCAGTCAGGGGATATGTGTAATGTAAACTTCCCTGCTGGC
GACGTGGGTGTTACTGAAAATGATTTCCAGCAATCAAACTCTGGATTTGCTATGGATGAT
GATTATATAGAGCTGGATGATCTGTTTGCTCCTGGGGAAACCTTCTCTTATGATTTTTCT
GGTGAAACCTTCTCCTATGATTTGACTGGTGGAACCTTCTCCTATGATTTGTCTGTGCCA
AACAATCAGTTTTTGCAGTACCCATTGGATCAATCAACTAATGGCAGTCACTATGGTGAT
GGTGCTACTCAATCAACTTTTGAAGCAAGTGGATCGCTTCCACCAATGCCTAGCACTTTT
GATGACATGCCTTCTGTTTCCAATAAGCCTGCAAACTCCAATTGCTTGAACCCAACCATG
AAAGACCCATTCTCTTAGACAGCAACTTTTGAGGTGAAGTGGAGCAATAATGGTGTATTT
TTGTTGCCTCTCTGTAGCCTTCGCAACATTCTCAGAAAGAGAAGCGTTATGCAAACAGGG
CCAACTACTGTTGCGTCAAGGTCTGCTTATGCAGAATTTGGGAAGACAAAGGTCATTGTG
TCAGTGTTTGGCCCAAGGGAGAGCAAGAAAGCAATGTTGTACAGTGACACTGGTAGGCTC
AATTGCAGTGTGAGCTATATAACATTTGCCACTGGTATACGTGGACAGGGGTTGGAAAAC
AA

Homology of Contig U35_14841 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None