barSeed - Barley Seed Development Database

Probe CUST_5518_PI390587928

Source Contig U35_14842

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5518_PI390587928	Hv_44K_v2	TTACCTATATGTCTAGTTGTGCTGTTGAAGATTGCTGAAACAACTTGGAAAGAGCCCTCC	514	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.391	1.557	1.290	0.919	0.337	0.377
Raw	1791.907	3139.625	2256.997	2508.508	330.598	397.042

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5484.11	2162	2e-24	2024 - 2083	100	60 / 60	plus	ABC04978 ABC35339
JLOC1	JLOC1_3530.3	3795	8e-25	3491 - 3550	100	60 / 60	plus
JLOC1	JLOC1_3530.2	3687	8e-25	3383 - 3442	100	60 / 60	plus
JLOC1	JLOC1_3530.1	3687	8e-25	3383 - 3442	100	60 / 60	plus
Harvest35	U35_14842	663	3e-25	515 - 574	100	60 / 60	plus

Contig Sequence (663 bp)

>U35_14842 663 Hv_44K_v2
TGATCCTATCCGTGGGATAGACTACAAACGCAGAGAGGCGTACTTATCGGAGAGCGAGTT
CCAGACTGTCTTCGGCGTCACCAAGGACGTGTTCTACCTGCAGCCAGGGTGGAAGCAAGA
GCTGCAGAAGCGGAAAGCCGATCTCTTTTGAATAAGCGGCTGCTTCCGGTCCTCCCGCAG
AATGAGATCAATCAATCATATGTGCTTGTTTTTACCCCTCTCATCATGATTGGTTGGCAC
GATCCATTGCTGGTCATCTTTGTGCGAATGGCTACCTGTGGCTTTTGGTTGGTTTTGCGA
ATTTTATAGGTCATTCTTTCGTTTGTACATGGACTGAGTGTGCTGTGCTGTGCTGCTTGC
AAGGTCCTAGTATGCTCTAGCTTGTTTTGTGATTGTCCATATGTGTATGGTTTTTCTCGG
TTTGTTTTACGTACATGCGTATGGGCAGTCCCCCTGGGTATGTTTTGGAAGGTTGTTTAC
ACTGTCATTCTGATGTAACACGGACAATTATATGTTACCTATATGTCTAGTTGTGCTGTT
GAAGATTGCTGAAACAACTTGGAAAGAGCCCTCCATCAAAAAAAAAAAAAAAAAAAAGGC
GGCATCTTTCTTATACCATTAAGAAAGACATGCCGGCTTATTGTTCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_14842 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None