barSeed - Barley Seed Development Database

Probe CUST_5514_PI390587928

Source Contig U35_14846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5514_PI390587928	Hv_44K_v2	AGAGGAACAAACAACTGAACATGTTGGTGAAGCAACATTTAGCTACGACCGCTTGATATC	1849	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5484.11	2162	2e-24	1441 - 1500	100	60 / 60	plus	ABC04978 ABC35339
MLOC	MLOC_5484.5	3153	2e-24	2980 - 3039	100	60 / 60	plus	ABC04978
MLOC	MLOC_5484.4	3265	2e-24	2981 - 3040	100	60 / 60	plus	ABC04978
MLOC	MLOC_5484.8	3320	2e-24	3187 - 3246	100	60 / 60	plus	ABC04978
MLOC	MLOC_5484.9	3212	2e-24	3079 - 3138	100	60 / 60	plus	ABC04978
MLOC	MLOC_5484.1	3359	2e-24	2906 - 2965	100	60 / 60	plus	ABC04978 ABC35339
MLOC	MLOC_5484.2	3251	2e-24	2798 - 2857	100	60 / 60	plus	ABC04978 ABC35339
MLOC	MLOC_5484.7	3284	2e-24	2910 - 2969	100	60 / 60	plus	ABC04978 ABC35339
MLOC	MLOC_5484.3	3060	2e-24	2939 - 2998	100	60 / 60	plus	ABC04978
MLOC	MLOC_5484.6	3576	2e-24	3024 - 3083	100	60 / 60	plus	ABC04978 ABC35339
JLOC1	JLOC1_3530.3	3795	8e-25	2908 - 2967	100	60 / 60	plus
JLOC1	JLOC1_3530.2	3687	8e-25	2800 - 2859	100	60 / 60	plus
JLOC1	JLOC1_3530.1	3687	8e-25	2800 - 2859	100	60 / 60	plus
Harvest21	ABC04978	1543	3e-25	805 - 864	100	60 / 60	plus	ABC04978
Harvest35	U35_14846	2513	3e-25	1850 - 1909	100	60 / 60	plus

Contig Sequence (2513 bp)

>U35_14846 2513 Hv_44K_v2
AAAGCCACTCATTCAAGTGAAAATTTGAATCATGGGCGGAGGTTACTACAACAGGGAACT
CAGGTGCAGAGGATGGGCGGGGAAAAGTTGCAGCTTTATTGAAGCAACAAGGTGTTGATG
TAAAAGGAGCTCCAAAAAGCAGTACTCCAGTAAACGAGGAAGTTCCTCCTTTGCTTGAAG
GTGGTGGAAGACTCGAGGTGTGGTGCATTGATGGAAATGCCAAGAGTCCACTTCCAAAAG
AGGACAATGGAAAATTTTACAGTGGAGACTGTTATATTGTTCTTTATACATATCATTCGG
GTGACAAGAAAGAAGAATATTATCTCAATTACTGGATTGGGAAGGAAAGCACAGCGGATG
ATCAAGTGATGGGAGCTGAACTAGCCAATACAATGTGGAATTCACTGAAAGGAAGGCCTG
TTCTGGGTCGTATTTATCAAGGGAAGGAACCACCGCAATTTGTTGCCCTTTTCCAGCCCA
TGGTTATCTTGAAGGGTGGTATCGGTTCTGGATACAAGAAGATTACAGAGGAAAAGGGTG
CAACCAGTGGAACTTACTCCCCCGAGGGCATAGCTCTGTTTCGGGTGTCTGGAACAGCTA
TCCATAACAATAAAACGCTTCACGTTGACGCGCTAGCTACATCTTTAAGCTCCACAGACT
GTTTTGTATTGCAATCTGGAAGTGCTATGTTTACATGGCATGGCAATTCTAGCACTTACG
AGCAACAGCAGTGGGCAGCGAAAGTTGCTGAGTTCTTGAAGCCTGGTGCGACAGTGAAAC
ATTGCAAGGAGGGAACAGAGAGTTCTGCTTTCTGGTTTGCTCTTGATGGAAAACAGAGCT
ATACAAGCAAACCCATCATGCAGGATACTATTGTCAGAGATCCTCATTTGTATGCCTTCT
CAATTAGGAAAGGAAGACTGGAGGTTACCGAGATCTTCAATTTTTGCCAAGATGATTTGT
TGACTGAAGACTTGATGATTCTTGACACACACGGGGAGGTCTTTATTTGGATTGGTCAGT
GCGTGGAACCAAAAGAGAAACAAAAGGCGTTCGACATTGGCCAGAAATATATAGAGCATG
CGATGTCGATTGAAGATCTTTCCCCGTATGTACCACTTTACAAAGTTTCTGAAGGGAATG
AGCCATGCTTCTTCAAGACATACTTCTCTTGGGATAGCACAAAATCTGTGATTCATGGGA
ATTCATTCCAAAAGAAACTTTCACTTCTTTTTGGATTACGCTCAGATTGGGGTGCATCTA
GGAGCTCTGGTAATGGTGGACCCACACAAAGGGCATCTGCATTAGCCGCTCTATCATCTG
CATTCAATCCATCTTCGCAGCAGAAGCAGGTTAATGATAGTAGGCCTCCAAGCTCTGGTG
ATGGGCCCACTCAACGTGCCTCTGCACTGGCTGCTTTGTCCAATGCAGCATTCAATCCAT
CTCCGCAGCAGAAGCAGGTTAATGATAGTAGGCCTCCAAGCTCGGGTGATGGACCCACTC
AACGCGCCTCTGCACTGGCTGCCTTGTCCAATGCGTTTAATCCATCCTCAAAACCAAAAA
CTCCACCTCCGTCACGTTCAGGTCAAGGGTCACAAAGAGCAGCTGCAGTTGCTGCGCTAT
CCTCTGTGCTGACTGCTGAGCAGTCTGGATCATCTGACAATCTCAGAGCTAGCAAGACGA
GCACAACATCAGAAAAGACTGATGCGGAGGTCGTCGTAATATCTCCATCAGAAGCATCTC
CTCGCTCTGAAGCTGGAGAATCCTCTGAATTTCAGTCAGAGAAAGATGCTCCAGTGGATG
AGGTGCCATCCCAGGTAGATGTAGCAGAGCCTGAGGCGCTGGAGGTGCCAGAGGAACAAA
CAACTGAACATGTTGGTGAAGCAACATTTAGCTACGACCGCTTGATATCTAAATCTACTG
ATCCTATCCGTGGGATAGACTACAAACGCAGAGAGGCGTACTTATCGGAGAGCGAGTTCC
AGACTGTCTTCGGCGTCACCAAGGACGTGTTCTACCTGCAGCCAGGGTGGAAGCAAGAGC
TGCAGAAGCGGAAAGCCGATCTCTTTTGAATAAGCGGCTGCTTCCGGTCCTCCCGCAGAA
TGAGATCAATCAATCATATGTGCTTGTTTTTACCCCTCTCATCATGATTGGTTGGCACGA
TCCATTGCTGGTCATCTTTGTGCGAATGGCTACCTGTGGCTTTTGGTTGGTTTTGCGAAT
TTTATAGGTCATTCTTTCGTTTGTACATGGACTGAGTGTGCTGTGCTGTGCTGCTTGCAA
GGTCCTAGTATGCTCTAGCTTGTTTTGTGATTGTCCATATGTGTATGGTTTTTCTCGGTT
TGTTTTACGTACATGCGTATGGGCAGTCCCCCTGGGTATGTTTTGGAAGGTTGTTTACAC
TGTCATTCTGATGTAACACGGACAATTATATGTTACCTATATGTCTAGTTGTGCTGTTGA
AGATTGCAAAAAAAAAAAAAAAAAGAGCCCTCCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g24220.2	637	5e-156	protein\|villin protein, putative, expressed
Brachypodium v1_2	Bradi2g60910.1	982	0.0
Arabidopsis v10	AT2G41740.1	976	0.0	\| Symbols: VLN2, ATVLN2 \| villin 2 \| chr2:17410962-17416878 REVERSE LENGTH=976