barSeed - Barley Seed Development Database

Probe CUST_550_PI390587928

Source Contig U35_20092

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_550_PI390587928	Hv_44K_v2	AGTAAGATATACTAGAAGATTAATCCGTTGGCCTCTTTTCAAATGTAACCTTCACTTTGG	1598	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.578	1.791	1.363	0.834	0.252	0.313
Raw	322.122	580.703	378.637	364.087	39.021	52.027

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369673	1724	2e-24	1656 - 1715	100	60 / 60	plus	ABC12051 ABC47850
JLOC1	JLOC1_32763.1	1748	8e-25	1672 - 1731	100	60 / 60	plus
Harvest21	ABC12051	1633	3e-25	1574 - 1633	100	60 / 60	plus	ABC12051
Harvest35	U35_20092	1658	3e-25	1599 - 1658	100	60 / 60	plus

Contig Sequence (1658 bp)

>U35_20092 1658 Hv_44K_v2
GCACTGCCGCACCAACACGTCAGTCTCGGCGACGCCAAACCCTCGCCCGCTCTCCAGAAC
CCCCGCTATGGCCGCCACCGGCGCTGCCGCGCCCGCGGCCGCGGCCGTGCAGCCGCCGCG
GCAGTTCAAGCTCGACCCGCAGAGCGAGCTCCGCGTGGAGGTGCTCCCCGACGCGACCCT
CCGCGTACGCCTCGTCTCCGGCACGGCCGAGATCTTCGGCACCGAGCTCCCCCCCGAGGG
CTGGCTCACCATCCCGCCCCGCTCCAAGATCGCCATTTTCACGTGGCACGGCGCGACGGT
GGAGCTGGACGGGGTCAGCGAGAGCGAGTACACGTCCGACGAGACGCCGATGGTGATTTA
TGTGAACGCACATGCCATTCTCGACGCACGGAGGGCGAGGGCGAGGGCAGCGCAGGGGGG
CGACTTGGAGGCCTCACAGGGACCTAGAGTGATTGTTGTGGGGCCAACCGATTCTGGAAA
AAGCACTCTGTGCAAAATGCTCCTTAGCTGGGCTGCCAAATTGGGATGGAAGCCTACATA
TGTGGATTTAGATATTGGCCAGGGTTCGATAACCATACCTGGATGCATTTCTGCTACACC
AATTGAGAAACCTATAGATATAGTTGATGGGATCCCTTTGGAGATGCCGCTTGCATACTT
TTATGGCCATCCAAATCCAAGTATTAATCCAGATGTTTACAGAGCGCTCATGAGAGAGCT
AGCTCAAACATTAGAGACACAGTTCTCTGGGAATGCTGAATCTAGGGCAGCTGGTATGGT
TATTAACACGATAGGGTGGGTTGAAGGCCTTGGCTACGAGTTACTTCTTAATGCAATTGA
AATCTTCAAGGCTAATGTAGTGCTGGTATTGGGACAGGAGAAGCTCTGGAAGATGTTAAA
AGATGCAGTACAAAGTAAGCCCAATATCGATGTCGTAAAACTTCATAAATCAGAGGGTGT
CGTCCTAAGGAATTCAAAATATCGTCAAAAGACTAGAAGTTTTCGTATCAAGGAGTACTT
TTATGGGATTGCAAATGATCTGGCACCACATTCAAATGTAGTCAACTTCAGTGATGTTTC
TGTTTTTAGAATTGGTAGTGGACATCAAGCTCCTCGGTCAGCATTACCAATTGGCGCAGA
GCCTGTGGCAGATCCTACTCGGCTTGTTGCTGTCAACATCAGCACTGATATGGTCCACAC
AGTGCTTGCTGTTTCTTATGCGAAGGAACCTGATGAAATAATTTCAAGGAAGAAGCTGAC
GTACATCGCAAAGGAAGAAGCTGACGTACATCGCACCTTGCCCAGGAGACCTGCCAAGCA
GGCTGTTAATCGCGAGCTCCCTGACATGGTACGAGCAGGCCTGACCTGGTTCGAGGTTGA
ACATTGTAGGTAGGTAACCATATGGCTGATGACATGTTGTAACGTCGACATGGATACTCT
GTGCATTTGATAACTGGAACACTGTGTTGGCAAAGCTGAATGGGTTGGATGATATCTCAG
GCATCTTGCTGCGAAGCTTTCTGATACCTTGCTTATGTTTTCTATATGCTGCTGTCAGTG
AAAGGTTGGTGTGCTCTTTTGTACGCTGTTGGAAAGTAAGTAAGATATACTAGAAGATTA
ATCCGTTGGCCTCTTTTCAAATGTAACCTTCACTTTGG

Homology of Contig U35_20092 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g12570.1	433	0.0	protein\|pre-mRNA cleavage complex II protein Clp1, putative, expressed
Brachypodium v1_2	Bradi3g08080.1	441	0.0
Arabidopsis v10	AT3G04680.1	444	3e-166	\| Symbols: CLPS3 \| CLP-similar protein 3 \| chr3:1270053-1272415 REVERSE LENGTH=444