barSeed - Barley Seed Development Database

Probe CUST_5502_PI390587928

Source Contig U35_43351

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5502_PI390587928	Hv_44K_v2	AGGCCAAGCTCGAGCTGCAGGAGGTCGTCGATTTCCTCAAGAACCCCGACAAGTACACCG	159	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72928.1	1847	2e-24	1469 - 1528	100	60 / 60	minus	ABC41094 ABC41535
JLOC1	JLOC1_48538.1	2008	8e-25	321 - 380	100	60 / 60	plus
Harvest21	ABC39913	219	3e-25	160 - 219	100	60 / 60	plus
Harvest35	U35_43351	219	3e-25	160 - 219	100	60 / 60	plus

Contig Sequence (219 bp)

>U35_43351 219 Hv_44K_v2
CCTTCGCGGNGCTCTTCTTCCTCTTCCGCCGCGCCCAGGGCGGCCCCGGCGGCGGCCCCG
GCGGGATGGGCGGCCCCATGGACTTCGGCCGCTCCAAGAGCAAGTTCCAGGAGGTGCCCG
AGACCGGGGTCACCTTCCAGGACGTCGCCGGCGCCGACCAGGCCAAGCTCGAGCTGCAGG
AGGTCGTCGATTTCCTCAAGAACCCCGACAAGTACACCG

Homology of Contig U35_43351 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None