barSeed - Barley Seed Development Database

Probe CUST_5492_PI390587928

Source Contig U35_29069

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5492_PI390587928	Hv_44K_v2	TGTGCTGAATTAGGTTACGAGCTTGTTGGAAGAGTGATTCATGGATACTCTGTGAAAACT	584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36627.1	3408	2e-24	785 - 844	100	60 / 60	plus	None
JLOC1	JLOC1_23609.1	3392	8e-25	800 - 859	100	60 / 60	plus
Harvest21	ABC28230	644	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_29069	644	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_29069 644 Hv_44K_v2
GAGCCCATTTCCTGGTTCGTGCGTCTGGCCTTGGAATAGATGGAACGGACAGTGTTCTCG
GCCAGAAATTGGTGCTGATGTACTTGAAGTGTGGGGACTTGGGGAGTGCAAGGAGGGTGT
TCGACGAAATGCCTCAAGTGAGCGATGTGCGTGTTTGGACCGCTCTGATGAGCGGTTATG
CCAAGGCCGGTGATTTACGAGAAGGTGTGCTGCTGTTTAGGAAGATGCACTGCTGCGGGG
TTCGACCGGACGCGTACACCATTTCCTGCGTCTTGAAGTGCATTGCTGGTCTAGGCAGTA
TCGCGGATGGCGAGGTAGTTCATGGGTACCTTGTGAAGTTGGGTTTTGGCTCGCAGTGTG
CAGTTGGAAATGCATTGATGGCTCTGTACTCAAGGTGTGGCTGTAACGAGGATGCTTTGC
GGGTCTTTGAAGGAATGCCTCAGCGGGATGCTATTTCTTGGAATTCTGTGATCAGTGGAT
GCTTTGCAAATGGATGGCACGGCAGGGCTGTTGAGCATTTGAGCGAAATGTGGTTTGAAG
GCCTGGAGATCGATTCAGTGACGATGCTCAGCGTTTTGCCTGCGTGTGCTGAATTAGGTT
ACGAGCTTGTTGGAAGAGTGATTCATGGATACTCTGTGAAAACT

Homology of Contig U35_29069 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10800.1	1083	5e-116	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi2g06450.1	1083	4e-133
Arabidopsis v10	None