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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5474_PI390587928Hv_44K_v2GGCTTGTACTCAACATTGATCTGGTCCATGATTAAATTGATCCCTGCTATCCTCAAAAAA2538GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3051.6792.0981.1830.4130.261
Raw 3987.6478112.8608641.8007636.133949.637651.920



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_72162.238563e-223795 - 385010056 / 56plus ABC08341 ABC44375
MLOCMLOC_72162.130893e-223028 - 308310056 / 56plus ABC08341 ABC44375
JLOC1JLOC1_47997.132581e-223108 - 316310056 / 56plus
Harvest21ABC0834123353e-252263 - 232210060 / 60plusABC08341
Harvest35U35_1709726113e-252539 - 259810060 / 60plus



Contig Sequence (2611 bp)

>U35_17097 2611 Hv_44K_v2
TGCCCTCCCTCCCCAGCTAAATCTGGCATTTAATTTGGTCTCCGGGCCCGTGCCAGAACG
CCTCTGGCCGGCGCGCTGTCCCTTGATGTGCTCTGGCTCAACGGCCAGAAAGGGACCTCC
CGCCTCAATGGGTCGATTAGCTTCGTCGCCAACATGACTATGCTCACGCAGCTGTGGCTG
CACTCCAACGACTTCACCGGCCCCTTGCCAGACTTCTCGGGGCTTAGCATTCTTTTTGAT
TGGAATCTCCGCGACAACCAGTTCACCGGTCCTGTGCCAGCCAGTCTTGTCAACCTCAAG
TCTCTGAAGAATGTGAGCCTGGGGAACAATTTGCTGCAGGGACCGAGTCCCAACTTTACT
TCCGCAGTGACAGTTAACAAGTCGGGTAAAAATCAATTCTGCTTGCCGGATGGAAGTCCG
TGTGATCCCCGTGTAGACCTGCTGCTGGAGGTAGCGGCTGGGTTCATGTACCCGGCGAAG
CTCGCAGCTGCTTGGGGAGGAAACGACCCTTGCCGTTATCAGCTGGGCGTTGGATGTGAT
AATGGGAACATCACATTGCTGAATTTTCCCAAACTGGGGCTTACCGGCACCGTCTCACCA
TCTATCGGGAAGATTGCCACACTTGTGACGCTAATTCTTTCAAACAACAACATTACTGGC
ACGGTGCCGAAGGAGCTTGCTGAGTTGCCAGACCTGAAGATGGTCGATCTGTCAAATAAC
AATCTATATGGGGAGATTCCTGAATTCCGCAAGAATGTGCTGTTGAAACTTGATGGCAAC
CCAAACATTGGCAAGGATGCCCCTGCGCCTGTGCCAGGTGGTAGCAGCAATGGTACTACG
CCCGGGGATGGAAGTGGTGGAAGCAACAAGGGTTCCTTTTTTACCGGCGTCATTGTTGGG
TCAGTGGTTGGAGCTGTGGGTGTACTAGGCCTTATTGCTGCATTGGGGTTCTATTGCTAT
AAGAGAAAGCAGAAGCCTTCCGGAAGGGTGCAGAGCCCACATGCTATGGTCATCCATCCC
CGGCACTCAGGGTCAGATCCTGACATGGTAAAGATCACAGTTGCTGGGGGAAATGCTAAT
GGTGGTGTGGCCACAAGCGAGCAATATAGCGAAGCAAGCAGTGCCCCCCGTGATATCCAT
GTCGTTGAGGCTGGGAATATGGTCATTTCAATTCAAGTACTGCGTAATGTGACCAACAAC
TTCAGTCAGGAGAACATCCTTGGTCGTGGTGGGTTTGGCACTGTCTACAAGGGTGAGCTC
CATGATGGTACAAAAATTGCTGTGAAGCGAATGGAGTCTGGTGTTATGGGCAACAAGGGG
TTAAACGAGTTTAAATCAGAGATTTCTGTGCTGACCAAGGTCCGTCATCGGAACCTTGTG
TCACTGCTTGGATACTGTCTTGATGGTAATGAGAGGATTCTTGTATATGAGTACATGCCA
CAGGGTCCAGTGAGCCAACACCTGTTTGAATGGAAAGAACACAATTTGCAGCCGTTGGAA
TGGAAGAGGCGACTCAGTATTGCGCTTGATGTTGCAAGAGGTGTTGAGTACCTGCACAGC
CTTGCGCAGCAAACGTTCATCCACAGAGATTTGAAGCCATCAAATATACTTCTTGGTGAT
GACATGAAGGCCAAGGTGGCAGACTTTGGATTGGTGCGGCTTGCGCCAGCTGATGGGAAG
TGTGTATCAGTAGAGACAAGGCTTGCTGGAACTTTTGGATATCTTGCCCCCGAGTATGCA
GTTACTGGACGTGTGACCACAAAAGCTGATGTCTTCAGCTTTGGTGTCATTTTGATGGAG
CTGGTCACGGGGCGCAGGGCGCTTGATGACACACAGCCTGAGGATAGCATGCACTTGGTT
ACATGGTTCCGTAGAATGCAGCTCAACAATGATACGTTCCAGAAGGCAATCGACGCAACC
ATCGACCTTGACGAGGAGACCTTAGCCAGCGTTAGCACCGTCGCGCAGCTCGCGGGTCAC
TGCTGTGCTAGGGAACCACATCAGCGGCCCGACATGGGTCATGCCGTCAACGTGCTCTCC
ACCCTTTCGGAGGTGTGGAAACCCGCAGACCCGGACTCCGACGACAGTTATGGCATCGAC
CTGGACATGACGCTGCCCCAGGCGTTGAAGAAATGGCAGGCCTTTGAGGACAGCAGCCAC
TTCGACGGCGCGACCTCTTCGTTCCTCGCGAGCCTGGATAACACCCAGACCAGCATCCCA
ACGAGGCCTCCAGGGTTTGCCGATTCCTTCACCTCTGCCGATGGAAGATAGACCGCTACG
TCCGAAGCTCCGGTCAGATGATCATTCTGTTCATTCATTCCTTTAGCCTCTTCAACCCCC
CTCCCTCCCTCCCTGCCTTTAAAAATGTTGCTGGATTTGGCCTTGTGGTGGCATGCCATG
TTAGCTCTCCTTTGATCATGTATGTATTGATGTGGCCTTTACTCTAGAAATTCCCTGGAA
GTCCGCGACTAACTGCCCGGTGCTGCTGCTATTATTGTTAGCTTTGAACCTAAGTAGAAG
ATTGTTTTAGGGTTTGTTGGCTTGTACTCAACATTGATCTGGTCCATGATTAAATTGATC
CCTGCTATCCTCAAAAAAAAAAAAAAAAAAA



Homology of Contig U35_17097 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g50810.19630.0protein|receptor protein kinase TMK1 precursor, putative, expressed
Brachypodium v1_2Bradi3g53350.19590.0
Arabidopsis v10AT1G66150.19420.0| Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942