barSeed - Barley Seed Development Database

Probe CUST_546_PI390587928

Source Contig U35_20096

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_546_PI390587928	Hv_44K_v2	AGCAAGATGTCATGTATGCTGAGTACCCTGTGGTTTCTCTTGACATGGTGTATCGATAGA	814	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.974	2.283	1.099	0.805	0.272	0.300
Raw	670.337	835.738	347.505	414.638	47.506	57.130

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37171.1	522	2e-24	36 - 95	100	60 / 60	minus	ABC11981
MLOC	MLOC_37171.2	439	2e-24	1 - 60	100	60 / 60	minus	ABC11981
MLOC	MLOC_37173.2	1797	2e-24	36 - 95	100	60 / 60	minus	ABC11981
JLOC1	JLOC1_24036.2	809	8e-25	722 - 781	100	60 / 60	plus
Harvest21	ABC11981	874	3e-25	815 - 874	100	60 / 60	plus	ABC11981
Harvest35	U35_20096	874	3e-25	815 - 874	100	60 / 60	plus

Contig Sequence (874 bp)

>U35_20096 874 Hv_44K_v2
CATCGTCCTCTCTTCTCCCCTGACGCCGCTGCGACCAGCTTTCCCCACCGCGCTCCACAA
ACCCTACCCCTCCTCCGCCCTCCGCCGCGTCGCCATGAGTCGTCAACCTGAGGTGCTATG
GGCTCAACGCTCGGAAAAAGTTTACCTGACTATCTCAGTCCCAGACGCAGAAGATGTTGT
GATCAAGACTGAACCTCAGGGCATCTTTAGTTTCTCAGCTGTTGCTCATGGGGAATGTTT
TAGCTTCACTCTGGAGCTATTTGATTCCATACTGCCTGAGGGAAGCAAAACAAAGACAAA
GGTGGGTTCGCGAAACATAATCTGTTCGATCCAGAAAGATAAGAAATGTTGGTGGAAGCG
CTTGCTGAAGTCAGAGGCAAAACATCCATACATCAAAGTTGACTGGAACAAATGGTGCGA
TGAGGATGAAGAGTCTGAGAATTCGGGTTCAGACGATGACTTTGATGGTGTGGAGAATGA
CGAAAATGATGCTGATGATGGAATGCTGTATCTCCCTGACCTTGAGAAGCTGAGAGGGAA
ATGAGCAGACAGGGGTTGTTGGGCTGGATATATATGAAGGAAGTAGGTTGTGCTGCTGTA
GCAAGTAGGTAACCGTTAACGCTATATAGCAAGTAATCTAGCAAGTTATCGTTAACGCAA
AAAACCTGGGAGGGTGGTACCAGACTTGTGACATGGTGCCATGTCTTCTTAACTACCAGA
TTATTACTCTTTGGTCGTCGCTGAGCTAGGGTTCTGAACGTAGTAGCTATGAGTTTGTGG
TTTGTTACCGACTTAAAAAAAAAAAAAAAAATGCAGCAAGATGTCATGTATGCTGAGTAC
CCTGTGGTTTCTCTTGACATGGTGTATCGATAGA

Homology of Contig U35_20096 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g45270.1	155	4e-74	protein\|CS domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g13340.1	153	2e-80
Arabidopsis v10	None