- Probe CUST_5461_PI390587928
- Source Contig U35_29077
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5461_PI390587928 | Hv_44K_v2 | GTTCTTATTCTCCTTATCGCAGAGGACGATCATACTCTCGTCATGACAGGCATAGATCAT | 601 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251934.1 | 1672 | 2e-24 | 880 - 939 | 100 | 60 / 60 | plus | ABC03496 |
| MLOC | MLOC_18525.2 | 1533 | 2e-24 | 635 - 694 | 100 | 60 / 60 | plus | ABC03496 |
| MLOC | MLOC_18525.3 | 1754 | 2e-24 | 744 - 803 | 100 | 60 / 60 | minus | ABC03496 |
| MLOC | MLOC_18524.2 | 5305 | 2e-24 | 4120 - 4179 | 100 | 60 / 60 | minus | ABC03496 ABC22790 |
| MLOC | MLOC_18525.5 | 1609 | 2e-24 | 632 - 691 | 100 | 60 / 60 | minus | ABC03496 |
| MLOC | MLOC_18524.4 | 4938 | 2e-24 | 4120 - 4179 | 100 | 60 / 60 | minus | ABC03496 ABC22790 |
| MLOC | MLOC_18525.4 | 1412 | 2e-24 | 744 - 803 | 100 | 60 / 60 | minus | ABC03496 |
| MLOC | MLOC_18524.3 | 5815 | 2e-24 | 3253 - 3312 | 100 | 60 / 60 | minus | ABC03496 ABC22790 ABC23222 |
| MLOC | MLOC_18525.1 | 3644 | 2e-24 | 1050 - 1109 | 100 | 60 / 60 | minus | ABC03496 ABC23222 |
| JLOC1 | JLOC1_12821.2 | 4169 | 8e-25 | 744 - 803 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12821.1 | 4071 | 8e-25 | 646 - 705 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12820.1 | 6029 | 8e-25 | 3483 - 3542 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC49007 | 619 | 3e-25 | 519 - 578 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28246 | 664 | 3e-25 | 602 - 661 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03496 | 1425 | 3e-25 | 847 - 906 | 100 | 60 / 60 | minus | ABC03496 |
| Harvest21 | ABC03494 | 738 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03493 | 832 | 3e-25 | 617 - 676 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_34432 | 245 | 3e-25 | 139 - 198 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_29077 | 664 | 3e-25 | 602 - 661 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1273 | 1425 | 3e-25 | 520 - 579 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1271 | 738 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1270 | 832 | 3e-25 | 617 - 676 | 100 | 60 / 60 | plus |
Contig Sequence (664 bp)
>U35_29077 664 Hv_44K_v2 GGGTGGTCGCAGGTCGGAACTGACGGAGGCAGAGGCGAAGACGAAGACAGAGACTCGAGA GGCCTCGCAGCGGCGACGAATCAAAGATGTCGTATTCGAGGTACAGGAGTCGTTCAAGGA GTGTGGACTCGAGTGATGTTGAGAACCCTGGGAACAATCTCTTTGTGACTGGTTTATCAT CTCGTCTAACTGATCGAGATCTGGAGAAGCATTTCTCTACAGAGGGAGAGGTGATTGATG CAAGTATTGTACTTGATCCATGGACAAGGGAATCACGGGGATTTGGATTTGTTACCATGG CCAATCTTAAGGAGGCAGAACGCTGCATCAAATATCTCGACAGTTCAGTGCTGGAAGGTC GTGTCATTACTGTTGAGAAGCAGGTTGATGCCCGCAGCTGTATGGCATCAAATTCAAAAG ATACACAACCTAAGATCGAAACAATGCTACCTCAACCAAAGGGCAAAGAGAAGACGAGGT CGAACCCCAACACCGGGAAGGTACCTTGGCAGCAAATCATCGCGTCGAAGGAGGTATTCC CGAAGCAGGTCACCTGTTAGGAGAGACCGTTACGGCTCACGCTACTCGCCCGAGCTAGAA CGTTCTTATTCTCCTTATCGCAGAGGACGATCATACTCTCGTCATGACAGGCATAGATCA TACT
Homology of Contig U35_29077 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |