barSeed - Barley Seed Development Database

Probe CUST_5444_PI390587928

Source Contig U35_29080

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5444_PI390587928	Hv_44K_v2	TGAAGAGGCTAAAGAAGCATCATTGGAGAATGAGGCTGATGTGGAAGACAAGCCTGCAAA	455	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.941	0.934	2.257	1.573	0.971	0.759
Raw	40.617	59.561	131.108	136.716	31.094	26.853

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65750.8	1680	2e-24	608 - 667	100	60 / 60	minus	None
MLOC	MLOC_65750.5	4718	2e-24	3653 - 3712	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.7	1368	2e-24	853 - 912	100	60 / 60	minus	None
MLOC	MLOC_65750.9	1491	2e-24	450 - 509	100	60 / 60	minus	None
MLOC	MLOC_65750.3	4847	2e-24	3745 - 3804	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.2	4776	2e-24	3687 - 3746	100	60 / 60	minus	ABC06980 ABC49743
JLOC1	JLOC1_43288.2	4821	8e-25	1045 - 1104	100	60 / 60	plus
JLOC1	JLOC1_43288.1	4851	8e-25	1045 - 1104	100	60 / 60	plus
Harvest21	ABC28250	618	3e-25	456 - 515	100	60 / 60	plus
Harvest35	U35_29080	618	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_29080 618 Hv_44K_v2
GGCCAAGAGCAGGAGGAAGGTGACCGAGGATTGACGGTGGAAGATGTGAAGGCTGCGTTG
TTGGTGCAGGCGCCTGTTGCAGTGAAGCCTGAATCCGACAATGGTGAATTGGGCGAGGGG
GCTGCTTCCCTGCCATCCCCTGATGCGCCGGTAGGTGAGGAGAAGCCTGAATTGACCGGC
GAACCAGAGGAAAGTGCCACTTTGGAGGTGAAGGAAGTGAGCAACGTGGCAGTCGATGCT
GAATTGTCCGAGGAGAAACCAGAGGCTGAGAAGCTTGCAGAGGTGGCCACTGGAGGCGAA
GATGATGGTGAGTTTGACAGCGAGAAGGCGGTTACGGCCTCCACCAGGAGCATGGAGGCG
GCGGAGCCGGAGGATAAGGTGGCTCCTACAGCTGAAGCCAATGGCAATTTGGGTGGTGAG
GCTGAAGAGCCTGCTGAGATGGTGGCGGTGGGAGGTGAAGAGGCTAAAGAAGCATCATTG
GAGAATGAGGCTGATGTGGAAGACAAGCCTGCAAAGCAGGAGCCTGAAAGTGATGCGAGT
CCAGTGGTTACTGACGGCGGTAACCGTGTTGATGTTGAAGACGAGGCGGTGAAGCCCGAG
CCTGAGAGCACTGCAAGT

Homology of Contig U35_29080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None