barSeed - Barley Seed Development Database

Probe CUST_5436_PI390587928

Source Contig U35_43379

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5436_PI390587928	Hv_44K_v2	CACATACTCCCTTCCATAAATGCGCCGGTGCATGAACAAGAATGCAATTGTAACAAAAAA	10	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.082	0.078	0.897	2.942	1.601	1.680
Raw	2.911	5.974	75.779	349.663	76.807	85.306

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58102.1	2940	3e-22	1087 - 1142	100	56 / 56	minus	ABC39971
MLOC	MLOC_58102.2	1395	3e-21	1342 - 1395	100	54 / 54	plus	ABC39971
JLOC1	JLOC1_37717.1	1999	1e-22	1631 - 1686	100	56 / 56	plus
Harvest21	ABC39971	532	3e-25	11 - 70	100	60 / 60	minus	ABC39971
Harvest35	U35_43379	532	3e-25	11 - 70	100	60 / 60	minus

Contig Sequence (532 bp)

>U35_43379 532 Hv_44K_v2
TTTTTTTTTTTTTTTTGTTACAATTGCATTCTTGTTCATGCACCGGCGCATTTATGGAAG
GGAGTATGTGATACAATCGGGATCTAGGACCCAAAGTTCATGGATGGATGCATGGAAGCA
TTCAAGGAAGGGGTAGTGGATAGAGGCGCTGCGTGGGTAGGAGCACGAGCGGCTCCTTCC
TCGCGGTGACCAGCCCCGCCTCCTCCTCCATGTCCAGCGGCGGATTTGGCACCTCCCAGT
CGAAGCACTGCACCAGCGCGGCCAGGAACGCCGGCACGGCCTGCATGGCCAGGCCCATGC
CGGGGCACGCGCGCCGCCCGCTCCCGAACGGCATGAGCTGCATGTGCTGCCCCTTGGGGT
CCACGGCCTCGCCGGCCCCGCCTGGCATGAACCGCTCCGGCCGGAACTCGAGCGGCTCGT
CCCACCACGCCGCGTCGCGGCCGATGGAGAAGATGTTGAAGAAGACGGACGTCTTGACAG
GGATGGTGTACCCACGGACGTGTATGGGCTCGATCGCCTCCCGCTGCGCGAA

Homology of Contig U35_43379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01250.1	519	2e-65	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi2g48450.1	517	5e-81
Arabidopsis v10	None