barSeed - Barley Seed Development Database

Probe CUST_5433_PI390587928

Source Contig U35_29088

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5433_PI390587928	Hv_44K_v2	AATTCCTTCATCTCCTTATTTACCCAAAGTTCTGAGAAAGAGTACTCAGAGCAGTGGGCC	585	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70638.4	1502	2e-24	546 - 605	100	60 / 60	plus	ABC05247
MLOC	MLOC_70638.1	1753	2e-24	843 - 902	100	60 / 60	plus	ABC05247
MLOC	MLOC_70638.2	1765	2e-24	855 - 914	100	60 / 60	plus	ABC05247
MLOC	MLOC_70638.3	1757	2e-24	847 - 906	100	60 / 60	plus	ABC05247
JLOC1	JLOC1_46888.3	1783	8e-25	685 - 744	100	60 / 60	plus
JLOC1	JLOC1_46888.2	1863	8e-25	765 - 824	100	60 / 60	plus
JLOC1	JLOC1_46888.1	1859	8e-25	761 - 820	100	60 / 60	plus
Harvest21	ABC28261	648	3e-25	586 - 645	100	60 / 60	plus
Harvest35	U35_29088	648	3e-25	586 - 645	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_29088 648 Hv_44K_v2
GCTGCCTTCGCCTCTGCCTCAGCCTCGCCCGCCGCGCAATCCCGTCGCCGGCGCCGCCGA
TTCGCCGCCCGAGCTCCGTATTGGGGCGCTCCCGACCGAGAGACGTTAAGCGCCTATGGT
TGGAACTGGTTGATATGATATCTGGTCACATTGTGGGATGCAATCCCCCCTTAGTGGGGG
GTGATTGAAGAAGTCAACAATAGGAGAACTTGCATCTTGCTGAAGTTTTCTGGTACTGAG
GCTCTTAAACTACCAAGTATGTCAGCGTCAAATGGGAAGTGGATTGATGGACTCCAGTTC
TCATCACTGTTCTGGCCCCCGCCACACGATGCGCAGCAGAAACAGGCACAAATTTTAGCC
TATGTTGAGTACTTTGGTCAGTTCACATCTGACAGCGAGCAATTCCCGGAGGATGTAGCT
CAGCTAATTCAAACTTGCTATCCATCAAAAGAAAAGCGGTTGGTAGATGAAGTATTAGCA
ACTTTTGTTCTCCATCACCCCGAGCATGGTCATGCAGTTGTACATCCAATTCTTTCACGC
ATCATAGACGGGACACTGAGTTATGATAGTCATGGTTCCCCATTCAATTCCTTCATCTCC
TTATTTACCCAAAGTTCTGAGAAAGAGTACTCAGAGCAGTGGGCCTTG

Homology of Contig U35_29088 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08700.8	971	6e-75	protein\|GIGANTEA, putative, expressed
Brachypodium v1_2	Bradi2g05226.1	1156	4e-80
Arabidopsis v10	AT1G22770.1	1173	6e-52	\| Symbols: GI, FB \| gigantea protein (GI) \| chr1:8062398-8067447 FORWARD LENGTH=1173