barSeed - Barley Seed Development Database

Probe CUST_5425_PI390587928

Source Contig U35_29093

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5425_PI390587928	Hv_44K_v2	GCTTGTCTCAGCTACATCATGTGTGTATATTGACCCATACGGTTCTCATTTGCTGAGTAA	652	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14650.2	13289	2e-24	11587 - 11646	100	60 / 60	plus	ABC18043
MLOC	MLOC_14650.3	13266	2e-24	11564 - 11623	100	60 / 60	plus	ABC18043
MLOC	MLOC_14650.1	13813	2e-24	12035 - 12094	100	60 / 60	plus	ABC18043
JLOC1	JLOC1_10003.3	13280	8e-25	11521 - 11580	100	60 / 60	plus
JLOC1	JLOC1_10003.2	13405	8e-25	11646 - 11705	100	60 / 60	plus
JLOC1	JLOC1_10003.1	13541	8e-25	11782 - 11841	100	60 / 60	plus
Harvest21	ABC28267	715	3e-25	653 - 712	100	60 / 60	plus
Harvest35	U35_29093	715	3e-25	653 - 712	100	60 / 60	plus

Contig Sequence (715 bp)

>U35_29093 715 Hv_44K_v2
GTTATAGTGAGGCTATCTTATTAAAGGACTGGCCATTGGCATGGAGTTCTGCTCCAATTC
TTGCGAAACAATCAATTATTCCACCTGATTTTTCTTGGGGAGCATTTCAGCTTCGGAGTC
CTCCTGCCTTCTCTACAGTTCTAAAGCACTTGCAGACTGTTGGGAGAGGCAATGGGGAGG
ACACACTGGCACACTGGCCATCTTCATCAGGGATAATGACAGTAGAGGATGCCTTTCTCA
GGATCTTGCAGTACTTGGAGAAAGTATGGGGAACAATATCGTCTTCAGGAAAAACAGAAT
TGATGGAACTGGCATTTATACCAGTTGCAAATGGTACTCGCTTAATAGAAGCAAAATCAC
TTTTTGCTCGTCTGACTATCAACATGTCACCTTTTGCTTTTGAACTTCCAAGTCTGTATC
TTCCATTTGTTGCCATTCTTAGAGAAATTGGGATGCAGGAAAGCCTTACAAACTCTTATG
CAAAGGAGCTTCTTTTAGATATCCAAAAAGCATGTGGTTACCAACGCCTGAACCCAAACG
AACTCCGTGCAGTGATGGAAATCTTGGACTACATGTGTTCAGGAGTCAACCAGCCTATCC
CAGACGGATCAGAAGGGCTTTTTGATTCTGTAATACCAGATGATGGCTGCAGGCTTGTCT
CAGCTACATCATGTGTGTATATTGACCCATACGGTTCTCATTTGCTGAGTAATAT

Homology of Contig U35_29093 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g26017.1	4755	3e-142
Arabidopsis v10	AT5G23110.1	4706	5e-90	Zinc finger, C3HC4 type (RING finger) family protein \| chr5:7758307-7775509 FORWARD LENGTH=4706