- Probe CUST_541_PI390587928
- Source Contig U35_32072
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_541_PI390587928 | Hv_44K_v2 | GCAGCCCGAGGATCCTCCTCCTGTGTAAAGAGTAGATTTAGTAGGAGTATTTTCTTCTCT | 400 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.180 | 0.229 | 0.562 | 1.632 | 1.900 | 2.545 |
| Raw | 7.710 | 14.803 | 33.596 | 151.834 | 60.323 | 89.011 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_17428.1 | 780 | 2e-24 | 321 - 380 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_12036.1 | 490 | 8e-25 | 37 - 96 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_32072 | 460 | 3e-25 | 401 - 460 | 100 | 60 / 60 | plus |
Contig Sequence (460 bp)
>U35_32072 460 Hv_44K_v2 AAGAGCGAGCTAGAGCTTCCCACCTCACTCCCTCCCTCATCAGCTCACTGTCTCACTCGC CTCGATTCTCCTCTCTCTTCTCTCCTTCGTCCAGGCTCAAGGAAGCGGTGGCCGGTGCTC ATGGAGGTGTTGGGCGCCGAGGACAAGCAGACGCCGCCCAGGAAGAGGAGCGGCCGGAAG GGCGCGCGCGGACGGCGATGGCCGGCGGCCGTCCTTCTCCGGGCGGTGCGCGCGGCTCGT CAAGGAGCAGCGCGCGCGGTTCTACATCATGCGCCGCTGCGTCACGATGCTCGTCTGCTG GCGCGACTACGCCTGAGGCACGCCGCGCCGCGCCGCGTGCGAAGCTCGACCGACCGAGGA GCAGCAGCCAGACGGACCAGCTCCCTCCCATCCTCTCTCAGCAGCCCGAGGATCCTCCTC CTGTGTAAAGAGTAGATTTAGTAGGAGTATTTTCTTCTCT
Homology of Contig U35_32072 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |