barSeed - Barley Seed Development Database

Probe CUST_5418_PI390587928

Source Contig U35_29098

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5418_PI390587928	Hv_44K_v2	TCTGGCAATGTTGAACACTACACCTTCGACGATTGTATCCACTGCTTCACCCAACATGAT	572	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11036.12	2793	2e-24	961 - 1020	100	60 / 60	plus	ABC14530
MLOC	MLOC_11036.6	1595	2e-24	1037 - 1096	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.5	2799	2e-24	1726 - 1785	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.16	1572	2e-24	608 - 667	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.15	1095	2e-24	596 - 655	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.7	2183	2e-24	1044 - 1103	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.14	2008	2e-24	850 - 909	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.2	2135	2e-24	1158 - 1217	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.13	1865	2e-24	865 - 924	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.8	2364	2e-24	1044 - 1103	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.3	2201	2e-24	1167 - 1226	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.9	2352	2e-24	1032 - 1091	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.1	6158	2e-24	3907 - 3966	100	60 / 60	minus	ABC14530
JLOC1	JLOC1_7265.1	4311	8e-25	2236 - 2295	100	60 / 60	minus
JLOC1	JLOC1_7266.3	2989	8e-25	885 - 944	100	60 / 60	plus
Harvest21	ABC28275	632	3e-25	573 - 632	100	60 / 60	plus
Harvest35	U35_29098	632	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_29098 632 Hv_44K_v2
TTCGTACGAGGCCGCCGCTTTCGGGCCTCCTCCTTCCCATTGGAGCGTACAAAGCTGGGC
GGCACCATTTAAAGGAAGAACACCAGGAGGAGGAGGAGATCGAGCCAAACCCCAAAGAAA
GGAACAAGAGTGAGAGCGCACCAACACCCCCAAACACCATCCATCGCTAGTGCTGCTACA
CTGCGCTCCGTCCCAGCGAGAGGGGGATCGCGCCGCTGTTGCTTCTGCCCTGCAGCCCTG
CCCTTTCTCAGCCTGCCTATCGGCGGCTCCTTCCCGACCGCGAGGACCGACGGACGGACG
GAGAAAGTGTAATCTGCAAGCTTCTCAAATCTGGAAGAAAGTTGGGTAGCAAAATCAAGC
GTTCTTCCGTAGCTTGGTTAAGTGTTCGTGAGGCTCAAGCCGGAGCATCAAATTTTGTCT
GGCATGCAGATGTCAACAGATCCTAACCACTACGGCGTATTTCCGCATTCATTCTTTGGC
CAACATGTTGTTTCATTTCAAACAAGTGCAATTACCAATGGGCCGGGAGCCATGCCGGTC
TGCCTGGACACTTCTAGTGGGATAAATGGTAATCTGGCAATGTTGAACACTACACCTTCG
ACGATTGTATCCACTGCTTCACCCAACATGAT

Homology of Contig U35_29098 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None