barSeed - Barley Seed Development Database

Probe CUST_540_PI390587928

Source Contig U35_32073

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_540_PI390587928	Hv_44K_v2	GTGCCGCTGTCCTACTACACCGGCGTCCTCGGCATGCCGGGGCCTCACGGCGTACGTGGG	412	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7196.3	1408	3e-22	437 - 495	98	59 / 60	plus	ABC03946 ABC19680 ABC44125 ABC48540
MLOC	MLOC_7196.1	1626	3e-22	705 - 763	98	59 / 60	plus	ABC03946 ABC19680 ABC44125 ABC48540
MLOC	MLOC_7196.2	823	3e-22	445 - 503	98	59 / 60	plus	ABC03946 ABC44125
JLOC1	JLOC1_4744.1	1556	1e-22	611 - 669	98	59 / 60	plus
Harvest21	ABC03946	1380	5e-23	446 - 504	98	59 / 60	plus	ABC03946
Harvest35	U35_32073	472	3e-25	413 - 472	100	60 / 60	plus
Harvest35	U35_15352	1447	5e-23	479 - 537	98	59 / 60	plus

Contig Sequence (472 bp)

>U35_32073 472 Hv_44K_v2
ATCCGTAGCCTTGCACAGACTCGCGCGCAGTCCAGTCCACCCACGGCGGCGGCGATCGAT
GGCGGAGCTCAAGGACTACGTGGAGGGCTACCCCACGGAGGCGCACATGGAGCTGCTCCC
GGCGGCGCCCGTCGACGAGGCCGAGGACGGCTCGGTGCTGGTCAAGAACCTCTACCTCTC
CTGCGACCCCTACATGCGCCCCAAGATGTCCCGCCCGCTGCACCAGTCCTACACCGCCGC
CTTCGTCCCGGGCGCCCCCATCACCGGCTACGGCGTGTCCGAGGTCGTCCGGTCCTCGAC
GCCCGGGGTCGCCGCCGGCGACCTCGTGTGGGGCATGACCGGCTGGGAGGACTACAGCGT
CATCAAGGCCCCCTTCACGGCCATGCTCACCAAGATCCAGCCCGACGACGGCGTGCCGCT
GTCCTACTACACCGGCGTCCTCGGCATGCCGGGGCCTCACGGCGTACGTGGG

Homology of Contig U35_32073 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g20620.1	361	1e-59
Arabidopsis v10	None