barSeed - Barley Seed Development Database

Probe CUST_539_PI390587928

Source Contig U35_32075

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_539_PI390587928	Hv_44K_v2	TCGAGTTCGAGCTCGTTGAACTCCTGCAGTGCAGTGCTAGCTAGCGACAGTCCAAGCTCA	28	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1579.1	1141	7e-23	146 - 205	98	59 / 60	plus	ABC02762 ABC02764
MLOC	MLOC_1579.2	1612	7e-23	146 - 205	98	59 / 60	plus	ABC02762 ABC02764 ABC02766
JLOC1	JLOC1_965.2	1141	4e-23	37 - 96	98	59 / 60	plus
JLOC1	JLOC1_965.1	1632	4e-23	132 - 191	98	59 / 60	plus
Harvest21	ABC02764	1505	1e-23	25 - 84	98	59 / 60	plus	ABC02764
Harvest35	U35_32075	449	3e-25	29 - 88	100	60 / 60	plus
Harvest35	U35_14488	1553	3e-25	58 - 117	100	60 / 60	plus

Contig Sequence (449 bp)

>U35_32075 449 Hv_44K_v2
ACTGGTGAAGTACAGCAGCACAGTGCACTCGAGTTCGAGCTCGTTGAACTCCTGCAGTGC
AGTGCTAGCTAGCGACAGTCCAAGCTCACCGTCACCCATGGCTCTCCAGCTTCTCCCCTC
CACCCTCTCCGTCCCCAAGAAGGGCAGCAGCATGGGCGCAGTGGCGGTGAAGGACACGGC
GGCGTCCGGCAGTTCGTTGACGCGTTCCGCCGCGCCGAGATGCCGCTGGATGTGCTGGTG
TGCAACGCCGCCATCTACCGGCCCACGGCGCGCACGCCGACCTTCACCGCCGACGGGCAC
GAGATGAGCGTGGGCGTGAACCACCTGGGCCACTTCCTGCTCGCCCGCCTCCTCATGGAG
GACCTCCAGAAGTCCGACTACCCGTCCCGCCGCATGGTCATCGTCGGCTCCATTACCGGC
AAACAGCACACGCTGGCGGGCAACGTGCC

Homology of Contig U35_32075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None