barSeed - Barley Seed Development Database

Probe CUST_5397_PI390587928

Source Contig U35_20198

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5397_PI390587928	Hv_44K_v2	ACAGTTCTAGAAACACCAACCATCATTCAAAGAGCTGCCCAAAGCTTTTAAATTATACTA	1351	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.246	0.584	1.113	1.464	0.944	1.320
Raw	106.512	382.784	670.925	1363.827	318.983	475.830

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251346.1	2229	2e-24	2153 - 2212	100	60 / 60	plus	ABC13120
MLOC	MLOC_64576.1	2050	3e-22	194 - 252	98	58 / 59	minus	ABC13120
JLOC1	JLOC1_42420.3	2132	1e-22	1798 - 1856	98	58 / 59	plus
JLOC1	JLOC1_42420.2	2044	1e-22	1710 - 1768	98	58 / 59	plus
JLOC1	JLOC1_42420.1	2100	1e-22	1766 - 1824	98	58 / 59	plus
Harvest21	ABC13120	914	3e-25	817 - 876	100	60 / 60	plus	ABC13120
Harvest35	U35_20198	1449	3e-25	1352 - 1411	100	60 / 60	plus

Contig Sequence (1449 bp)

>U35_20198 1449 Hv_44K_v2
ATGTGTCAAATGGTTTGGGGGGGTGGGTGCGCCGGTTGTCTAAGTATGGATAGGTGGGAC
AAACTGAATGGTCTATTCCAAAAGACAGGAGCAATTATCACGTTTGGTCTGAATGCACTC
CATGGAAGGTATAATGTCCAACGTTCCTTCTGGGCGGGAAAATGGAACTCTACAAACACC
TATGATTTTGTCAAATACACAATCTCAAAAGGATATCCAGTTGACTCGTGGGAATTCGGT
AATGAGCTGAGTGGGCATGGAACCGGGGCAAGGGTCGATGCCAAACTTTATGGAAAGGAT
GTGACTGAACTTAAATCCATACTCCGGCAGTTGTATAGGGCACCGCTATCCCAGCCACTG
CTGTTAGCCCCTGGAGGATTCTTTGATCAACAGTGGTACACTCAGTTACTTCAGACTTCA
GGTCATGGTGTTGTTAATGCCTTGACACATCATATTTACAATCTTGGTGGAGGGGATGAT
GTCCACCTTATGAGGAAGATAGTAGATCCTAAGTACCTAGATCGTGCTGAAGATACTTAC
AGGGACATGCAACTGACCCTCCAAAGGCATGGGACATGGGCTTCTGCTTGGGTTAGTGAA
AGCGGTGGGGTATTCAACAATGGCCGCCAACTGGTGTCAAATACTTTCATGAACAGCATC
TGGTATCTCGATCAACTTGGAATGTCATCGAAGTACAACACAAAAGTGTTCTGCAGGCAG
ACTCTCATCGGTGGCAACTACGGACTGCTTGACACGCAGACGTTCTTACCAAATCCTGAT
TACTACAGTGCTCTGCTATGGCATCGGCTTATGGGCAATGGAGTTCTCTCAGTCGATATC
AATGCACCGCGTAAGCTGCGTGCTTATGCCCACTGCAGCAAGCGACACAAGGGGATCACG
CTCCTCCTGATCAACCTAAGCAACAGCACCGGGTACAACGTGACCCTCCAGAACGACCTC
AACGTGAGCGTCGAGAGGGGCAGCGGCCACCGGAGGCACCGCGGCGGCGGTCTCAGAAGA
GCGGTGTCATGGCTGGGAAGCAAGACGTCGAGCGAGAGCACAAAGAGGGACGAGTACCAT
CTGACCGCCAAGGACGGCGACCACCAGAGCAGGACGATGCTGCTCAACGGACTCCCGCTG
GAGCTGGGGGACGACGGCGGCGTCCCGGCCATGAACCCGGTGCCCGCCGCCGTGGATTCC
CCCGTGCACCTGGCCCCGACATCGATCGCGTTTGTGGTCCTGCCGAGGTTCGAGGCCAAG
GCCTGTTCTTGAGGAAAAATGTTATTTTGTTCGTTTTGAGGTGTAGAGATAGAATCTTAC
ACATGAGGAAATGAGGCAGGAGGACATTTTTACAGTTCTAGAAACACCAACCATCATTCA
AAGAGCTGCCCAAAGCTTTTAAATTATACTAGTAAATTAAAAGTTTCGATTCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_20198 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11320.1	542	0.0	protein\|heparanase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g70300.1	545	0.0
Arabidopsis v10	AT5G61250.2	539	8e-168	\| Symbols: AtGUS1, GUS1 \| glucuronidase 1 \| chr5:24632294-24634597 REVERSE LENGTH=539