barSeed - Barley Seed Development Database

Probe CUST_5394_PI390587928

Source Contig U35_32171

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5394_PI390587928	Hv_44K_v2	AAGAAGAAGCTGGCCATGGAGGTCAGGAAGCAGCGGAAGCAGCTCGACAAGGACCGCCAC	280	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59737.1	4311	2e-24	3988 - 4047	100	60 / 60	minus	ABC13878
JLOC1	JLOC1_38889.2	4381	8e-25	275 - 334	100	60 / 60	plus
Harvest35	U35_32171	451	3e-25	281 - 340	100	60 / 60	plus

Contig Sequence (451 bp)

>U35_32171 451 Hv_44K_v2
TTGTTCCTGTTGGCCTAATGGCTAACCCTAGTAGGCCGCGGCTCCCCCAAGCTCGGCCGC
CCCGTCTCGTCTCGCCTCGTCTCGTCTCGTATCGAGCATAAACCTCGGCAGACGGCGGCG
GCTCGACCAGGGAGACCCAGCGAACCAACCAACCTATCCAATGGCCGGCAAGAAGAGGCC
ACCGACGGTGCTGGCGGAGCTCGACCCCGCCGCGTCGGACTCCTCGCAGGACGAGGCCGC
GGCGAGGGCGGCCCCGGCGGGGGAGGTGCCGGCGAAGAAGAAGAAGAAGCTGGCCATGGA
GGTCAGGAAGCAGCGGAAGCAGCTCGACAAGGACCGCCACCGCCAGTCCGCGGAGAAGGC
CGCCGCCGCCCCCAAGCCGCAGCCCGCGCCCGCCGCGGCGGTGGAGGAGGCTGCTGCGGC
GGTCCCGGTGCCAGCGCCAGCGCCGGCTGCC

Homology of Contig U35_32171 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None