barSeed - Barley Seed Development Database

Probe CUST_5392_PI390587928

Source Contig U35_32174

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5392_PI390587928	Hv_44K_v2	CCGACTCCATCGCCGTCGGCGACCGGGCCTTCGCCGTCGACGGCTTCCTCGACGACAGGG	431	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.333	1.336	2.338	0.894	0.605	0.417
Raw	20.522	27.969	47.100	26.890	5.337	3.122

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369530	3858	2e-24	500 - 559	100	60 / 60	plus	None
MLOC	MLOC_52557.1	3482	2e-24	169 - 228	100	60 / 60	plus	None
JLOC1	JLOC1_33693.1	3467	8e-25	169 - 228	100	60 / 60	plus
Harvest35	U35_32174	491	3e-25	432 - 491	100	60 / 60	plus

Contig Sequence (491 bp)

>U35_32174 491 Hv_44K_v2
ACCGCCTCCCGTCTCCTCCTCCTCCCCCCTTCGATCCGGCCGCCGCCGCCGCCGCAGATC
CAGCCGACAGCGAGCGAGCGAGCGGGCGGCAGCCATGGAGATGCTGCGGCGGAACCTGAA
GCGCCAGACCTCGCGCTCGCGCTCCCTCTCCCCGCTCTCCGTCGCCTCCCCCGCCCACGA
CCAGGAGAACCTCCACCCCAACCTCGCCGCCGCCCCCGCCCCGCCCTCCCCGTCCACCAA
GCCCTCCACGCCCGGCCTCTCCAAGCCCGTCCCCACCGCAGCCGCCGTTCCCGCTCCCCA
GCCAGCGGCCGCGCCCGCTCAGCAGAAGCCAGCCGACGATGAGCCCGCCGTCAAGGTCGT
GGTGCGGGTGCGGCCGGCGGTGAGCCTGCCGGTGGACGGCAAGGACCTCTTCTTCGTGCG
CAGGACATCCCCCGACTCCATCGCCGTCGGCGACCGGGCCTTCGCCGTCGACGGCTTCCT
CGACGACAGGG

Homology of Contig U35_32174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None