barSeed - Barley Seed Development Database

Probe CUST_5391_PI390587928

Source Contig U35_32175

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5391_PI390587928	Hv_44K_v2	TTGAAAGGTGCATAATCTACATGCCTAGAGTTGATTTGTGGGCAGTCAACACGGTCCATG	420	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.716	1.528	1.203	0.674	0.719	0.475
Raw	82.813	97.166	77.718	58.668	25.194	18.587

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5049.1	5990	2e-24	3003 - 3062	100	60 / 60	minus	ABC20233
JLOC1	JLOC1_3216.1	5868	8e-25	2937 - 2996	100	60 / 60	plus
Harvest35	U35_32175	483	3e-25	421 - 480	100	60 / 60	plus

Contig Sequence (483 bp)

>U35_32175 483 Hv_44K_v2
TGGAAAAGAACAACGTACCTCACACTTTCTGGTGTTCCTATCTTCCCGTTTTGATACAGC
AGAAAGATATTGGAGATAAAATTGTATCAATCTTGTCAAGCTATGGTCTTACAGCATCTC
AACTAGGAAATCATGGTTCAATGTTGTTAAGTCAAAACAAACAACATGAGAAGTTCGATG
ACCGCAGGTTGAGTTCCACCTGTTCTCTGAACAAAGGAGGGTTAGCATATAAGTTAACAG
GTTTTCGAGCTTTAGTTGCTGGAGCACCCGGATCAGGCCAACAACATCTAGTTCGTTGCC
TTCTTCATGGTTTTGTGGGTCAGACTGTAATACACAAGCTTGATCTTGCAACTATGGCAC
AGGAGGGAAATGGTGACATCCTTAATGGATTGACGCANATTCTGTTGAAAGGTCTACACC
TTGAAAGGTGCATAATCTACATGCCTAGAGTTGATTTGTGGGCAGTCAACACGGTCCATG
AAC

Homology of Contig U35_32175 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47800.1	920	7e-75	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi2g46130.1	1823	7e-81
Arabidopsis v10	None