barSeed - Barley Seed Development Database

Probe CUST_5390_PI390587928

Source Contig U35_32176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5390_PI390587928	Hv_44K_v2	CATGACGTGCAACACCATCCAGAAACGCAGGATCGTTATTGTTGTCAAACTTGAAGTTCT	427	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53917.1	3322	2e-24	2838 - 2897	100	60 / 60	minus	None
JLOC1	JLOC1_34669.2	3319	8e-25	475 - 534	100	60 / 60	plus
Harvest35	U35_32251	475	3e-25	154 - 213	100	60 / 60	plus
Harvest35	U35_32176	487	3e-25	428 - 487	100	60 / 60	plus

Contig Sequence (487 bp)

>U35_32176 487 Hv_44K_v2
CCACCGCCCACCAATCCCCACCTCACAAACCGAGCCCTCCTCTCTTCCCGTACACCGCCG
CCACTCCCCCATCCCCCACCCCACACCACCAACGGCAAAACCCTCCCCCAAATTCGAAAC
CTCCCCTCCCCTCTCCTTCCGCCGATTCGATGGAGGCGCCGCCGCCGCTGACGCCGGGCG
CGGTGATGGAGATATGGGAGCTCCCGAACGGGCCGGCGAGGTTCCAGCCGGTGCTGCAGG
TCGCTGACCTGCGCCCCGTCGTCGCCAAGAACACGACCGCGGCGGCGGCCGCGGCGCAGC
ACTCGGAGCGGTTCCGCATGCTGCTCTCCGACGGCGTCCACTCCCAGCAGTCCATGCTCG
GCACCGGCCTCAACGACCTCATAAAGGACGGAACCCTCCGCGTCGGCTCCATCGTCCACC
TCACGGACATGACGTGCAACACCATCCAGAAACGCAGGATCGTTATTGTTGTCAAACTTG
AAGTTCT

Homology of Contig U35_32176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None