barSeed - Barley Seed Development Database

Probe CUST_538_PI415269222

Source Contig TA41960_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_538_PI415269222	Hv_44K_v2	TGAAAGTATAGCTAGTAACTGATCGATGATGACCGTACTAGTAACCGACGAGAGCAGCAG	619	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56636.2	888	2e-24	534 - 593	100	60 / 60	minus	ABC13015
MLOC	MLOC_56635.1	736	2e-24	369 - 428	100	60 / 60	minus	ABC13015
MLOC	MLOC_56636.1	1354	2e-24	987 - 1046	100	60 / 60	minus	ABC13015
JLOC1	JLOC1_36656.1	1374	8e-25	829 - 888	100	60 / 60	minus
Harvest21	ABC13015	921	3e-25	618 - 677	100	60 / 60	minus	ABC13015
Harvest35	U35_19638	921	3e-25	618 - 677	100	60 / 60	minus

Contig Sequence (886 bp)

>TA41960_4513 886 Hv_44K_v2
TTCTACTTCCCTCCATCAGCTCGCCATCATTCACACACCACCGCATGCAGTAGGCAGTAG
CCACACTCCACTGCCATCGCTCTCACGCACACACAGCATCACCGGCTTACCTACACGGCA
CTCCCGTCGCTCTCAGCTGCCATGGCGTCCTACAGGCTGCTGGTCATCCTCGTCTTCTCC
GCGCCGCTCCTCGACGCCGCAGCCGCCGACACCTCCTACCAGGCCGACTGCCCCTACCCG
TGCCTGCTGCCGCCGCCCACGCCGCCGGCCTCCACCGCCGACTGCCCGCCGCCGCCCTCC
GCGCCGTCCGGCTCCGGCTACGGGTACCCGCCCCCGTCCTCCTCCGGGAACGCGCCGCCG
TCGCCCTCGTACTGGAACAACCCTCCGCCCTCCGGCGGCTACATTCCCGGCTACTACCAG
CCTCCCTCCGGCGGGGGTGGCGGAAGAGGCGGAGGCGGTGGAGGAGGTGGCGGGAACTAC
AGGCCGGCGCCGCCCCCGCCCAACCCGATCCTGCCGTGGTACCCATGGTACTACCGGTCC
CCGCCGTCCTCATCCGCGGTGGCAACAACGGGGAGCGCGTGGGCGGCCGTGTTCTGCTTG
GTGGCCGCCGTAACTGCCGCTGCTGCTCTCGTCGGTTACTAGTACGGTCATCATCGATCA
GTTACTAGCTATACTTTCAGTTCGTAGTCCATCAATTCTTCATATATACTTGATGTATAA
GATAATGGGGTGCCATTATTATTAGCCATGCATAATATCTACTAGTATCCATCGATGGTA
GTACTCCCTACATATTGATTCATTGCTCAGTTGGCTTTTGGGTGGTGAGTGGAGCGAGCA
ACTATATATTGCTGGTGCGGCTAGTTTTCTTGGAGCATAATATATG

Homology of Contig TA41960_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None