barSeed - Barley Seed Development Database

Probe CUST_538_PI390587928

Source Contig U35_32076

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_538_PI390587928	Hv_44K_v2	TAGACTTCGAAACCAACAACGCGCACGCCGGAATCTCCTCATGGCCGACGAGAAAGAAGG	43	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80060.2	1138	2e-24	869 - 928	100	60 / 60	minus	ABC14163 ABC29230
MLOC	MLOC_80060.1	1053	2e-24	799 - 858	100	60 / 60	minus	ABC14163 ABC29230
JLOC1	JLOC1_53317.1	963	8e-25	164 - 223	100	60 / 60	plus
Harvest35	U35_32076	458	3e-25	44 - 103	100	60 / 60	plus

Contig Sequence (458 bp)

>U35_32076 458 Hv_44K_v2
AAAACTGACCCCCGTCTCAAGAGTCAAGAACCCTCTCCCTCCATAGACTTCGAAACCAAC
AACGCGCACGCCGGAATCTCCTCATGGCCGACGAGAAAGAAGGCGACTCGCTGCAGCCGC
CGTCCAAGCTGCCCCGCCTCTCCTCCGCCGACGAGAACGCAGGGGCGGTGACGATGGCGG
TCTCGTCGCCGCTGGGTCTTGGCCTCGGCCTGGGGCTCGGCGGCGATAGCCGTGGCGAGC
AGCACGCCTTGGAAGCACGGGCGGTGGCGGCGGCGGCGAAGTCGGTGCTGACGTTCATGC
AGCAGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCGGCGGGGGCGCCCG
TGCCGGTGCACCTCGTGCTTCCCATCTGGAAGAGCGTCGCCGCCTCCTTCTTCGGCCCGC
ACCGCTTCCCCTCGCTGATTGGGCTGGGGAGCATGTGC

Homology of Contig U35_32076 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None