barSeed - Barley Seed Development Database

Probe CUST_5380_PI390587928

Source Contig U35_32186

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5380_PI390587928	Hv_44K_v2	ACACATGTGCTGAAGGATACACTAGGTGGCAATTCAAGGGCTACATTTTTGTGCTCCATT	434	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369530	3858	2e-24	1303 - 1362	100	60 / 60	plus	None
MLOC	MLOC_52557.1	3482	2e-24	972 - 1031	100	60 / 60	plus	None
JLOC1	JLOC1_33693.1	3467	8e-25	972 - 1031	100	60 / 60	plus
Harvest35	U35_32186	497	3e-25	435 - 494	100	60 / 60	plus

Contig Sequence (497 bp)

>U35_32186 497 Hv_44K_v2
ATCCATCTCAACGTAATCTTCAGATAAGAGAGACCACTGGCAATGGTATCCATGTTGAGA
ACTTGACCGAGGAGTATGTATCGACAGTCGAGGATGTAAATCAGATCTTGATGAAGGGCC
TATCAAAAAGAAAAATTGGCGCAGATAGTATGAACTTAAAAAATTCACGTTCTCACGTGA
TATTCACTTGTGTAATTGAAGCTTGGAGCAAGGATTTGTCATCAAATGGCTTTAGTAGTT
CAAAAACTAGCAAAATTACCTTTGTTGATCTAGCTGGTGTTGATATTGATGAAAGTGATG
GTGCTGGAAAGAACATTACACGAGAAGAAAGACACGTTAAAAAGTCTCTCTCAAGCCTCG
GGAAACTAGTCAATATTCTTTCAGAAGAACCAAAGCCCCAGGAAGATGAATTGCCATACA
GCCAGTCCCGTTTGACACATGTGCTGAAGGATACACTAGGTGGCAATTCAAGGGCTACAT
TTTTGTGCTCCATTTCT

Homology of Contig U35_32186 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g39020.1	1130	7e-72	protein\|Kinesin motor domain domain containing protein, expressed
Brachypodium v1_2	Bradi1g15330.1	1107	3e-85
Arabidopsis v10	None