barSeed - Barley Seed Development Database

Probe CUST_537_PI415269222

Source Contig TA41557_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_537_PI415269222	Hv_44K_v2	TCATCAAATTAATCGTTTCATCAGACATCCACGTCTCGGTCTCGGTCTTGAGCAACCACA	387	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75464.3	2445	2e-24	2098 - 2157	100	60 / 60	minus	ABC12144 ABC12145
MLOC	MLOC_75465.1	379	2e-24	238 - 297	100	60 / 60	minus	ABC12144 ABC12145
MLOC	MLOC_75464.1	1773	2e-24	1593 - 1652	100	60 / 60	minus	ABC12144 ABC12145
MLOC	MLOC_75464.2	1976	2e-24	1762 - 1821	100	60 / 60	minus	ABC12144 ABC12145
JLOC1	JLOC1_50343.1	1877	8e-25	1551 - 1610	100	60 / 60	minus
Harvest21	ABC12145	1040	3e-25	826 - 885	100	60 / 60	minus	ABC12145

Contig Sequence (682 bp)

>TA41557_4513 682 Hv_44K_v2
AAGCCCGGGCCGGCGTCCGAGCGCAACTACGGCCTGTTCAAGCCCGACAGCACGCCGGTG
TACCCGCTGACGTACAAGCCTGCGGGCGGCGGAATCGGCGGGGGCAACAGCACCGGCGGA
GACAACGACTACTACGACATCTCGGCTGCGTCGCGGGAGCCCACGGGTCGGCGGTGGACA
TGGGCGCAAGCTGCTGTGTCAGGAGGTGTTGCTGCCCTCATTCATGGTTGCAGCCTGAGG
TACTGAGATCATCATGGAGCGTGCCACTCTCTCTCGTCTTGATGGCTGAGATTCAGGGGT
AGGTAGATAGGACGGAATGGAACTGCCTGCTCTGGAGCAATGGTGTTGATGATGATCGTG
ATCCGCTGCGCGGCGCTCCTTTGCTGTTGTGGTTGCTCAAGACCGAGACCGAGACGTGGA
TGTCTGATGAAACGATTAATTTGATGATGGCATCCGAGCTATGTACTACACACTCTCTAG
TTCCGATTCATCTTGGTGCCTTAAAAACCGCTGATCGTTGGGACTAAAATAGACCCAGAT
CAGTCGGTTTTAATTGCCTTTTAATAGAAATGTTCTCTTGAGTAGTACCCTAGCACTGCT
GTCTACAAATATACTGGATTTCATGAGGTGCCAAAGCTGAAGACTAGTAGCCCTTCCAAA
TAAAATGAAAATAAATGAAGCT

Homology of Contig TA41557_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None