barSeed - Barley Seed Development Database

Probe CUST_537_PI390587928

Source Contig U35_32078

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_537_PI390587928	Hv_44K_v2	CAAATCAGGAGTTCTACCTGTCACCACCGCTGCTAGGGATTTGCCCTACCGGCCAAAAAA	9	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370895	1051	2e-24	9 - 68	100	60 / 60	plus	ABC24951
MLOC	MLOC_80554.1	1131	3e-21	172 - 231	97	58 / 60	plus	None
Harvest35	U35_32078	451	3e-25	10 - 69	100	60 / 60	plus

Contig Sequence (451 bp)

>U35_32078 451 Hv_44K_v2
GTGCGGCTTCAAATCAGGAGTTCTACCTGTCACCACCGCTGCTAGGGATTTGCCCTACCG
GCCAAAAAAAAAATTGCGCCGCACGCGCCGGAGGATTGGGCTGCTCTGCCGCCACCTCAT
CTCAGGTCGTGGCCTCGACGGGACTGCGCCGGAACTGCGCCTGAAGGCGCCGTGTTCTGG
CCGGTTGGTAGATGACAGCGTCGTGCAGCCGGATGGATCCGTCGCTCCAATCGCCGGTTG
TTGGCCGCGTCTGAGGACGCGCCACCGGGAGCTGTGATGGGAGCGCGTCCGCACGGCTTG
TGACGCGTCGCCGTCGTGATGTGAGGCACGCGTGCGCTGTATGCGGAGGCCGAAGGGCGC
TTCCGAGGTGTGAGCCAGGAGGGCTTGCGCGCCCGATGCTACGCACCAGAGGGTGTTGTC
GCTGCAGCGCCGTTGGTCTTCTGCGCGCCGT

Homology of Contig U35_32078 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None