barSeed - Barley Seed Development Database

Probe CUST_5373_PI390587928

Source Contig U35_32193

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5373_PI390587928	Hv_44K_v2	ATCGTTTTTTCCGGAAAGATGGTTATGCATGGCGAAGGAAGAAAGACGGAAGAACTGTCG	406	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.445	0.673	0.938	1.107	1.392	1.225
Raw	3.389	9.886	14.347	23.171	11.709	11.492

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58709.2	2947	2e-24	2853 - 2912	100	60 / 60	minus	ABC20536 ABC24810
MLOC	MLOC_58709.1	3268	2e-24	3174 - 3233	100	60 / 60	minus	ABC20536 ABC24810
MLOC	MLOC_58709.3	3312	2e-24	3218 - 3277	100	60 / 60	minus	ABC20536 ABC24810
JLOC1	JLOC1_38163.4	3274	8e-25	36 - 95	100	60 / 60	plus
JLOC1	JLOC1_38163.3	3116	8e-25	35 - 94	100	60 / 60	plus
Harvest35	U35_32193	528	3e-25	407 - 466	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_32193 528 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAGCTGTTGCACTTTTCTGGGAAAGAACCCTTGTGCTGTC
CTACCTCCCCATTCAAGTCCAAGCACAAGCAGCATCAGCGCCTTCACTCCCTTGCCTGCT
TACTGTTTCAGTTCTTGTTTGTTTGGAGGCGGGGCTTCCACTTCGTGGAGCTCTTGTCGA
GCCCCCTCCTTCCATGAGAGCTTCGAGGCTGCCGGTGCCGGATCTCCGCAAGTGACCATG
AGCCAGAGTTTTGACATCAACGTGCTTCTCGGAGAAGCAAAGAGCAGGTGGTTAAAGCCT
TCTGAAGTCTACTATATCTTGTTGAATCATGAGCAGCTCCAGATCACCCATGAGCCACCG
AATAAGCCACCCAGTGGTTCACTATTCCTTTATAATCGCCGTGTGAATCGTTTTTTCCGG
AAAGATGGTTATGCATGGCGAAGGAAGAAAGACGGAAGAACTGTCGGGGAGGCTCATGAG
CGATTGAAGGTCGGAAATATTGATGCTCTGAGTTGCTACTATGCTCAC

Homology of Contig U35_32193 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g31900.1	1004	6e-51	protein\|calmodulin-binding transcription activator 4, putative, expressed
Brachypodium v1_2	Bradi5g08167.2	888	1e-58
Arabidopsis v10	None