barSeed - Barley Seed Development Database

Probe CUST_5367_PI390587928

Source Contig U35_44170

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5367_PI390587928	Hv_44K_v2	AATTCATCTCCAAGAAGTACACACAAAGAAGGACGTAGGCGTTTACCTTGAACGTGAGGG	30	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.876	1.059	1.065	0.966	0.375	0.329
Raw	131.507	105.153	105.019	150.034	19.938	19.091

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC41702	510	3e-25	31 - 90	100	60 / 60	minus	ABC41702
Harvest35	U35_44170	510	3e-25	31 - 90	100	60 / 60	minus

Contig Sequence (510 bp)

>U35_44170 510 Hv_44K_v2
TTTTTTTTTTTTTTTTTACCCAGGTTCGGCCCCTCACGTTCAAGGTAAACGCCTACGTCC
TTCTTTGTGTGTACTTCTTGGAGATGAATTACAAGGGAGCAGATTCTCTTGACCTAGCTA
TTGATCGATTACAACTTAAGTCTATTAGCCTGAGGGACTCGTCTTTATATACAAGTCGAG
GCCCTGGGCTTACAAGGATCTGAGTCATGATACGATTCGTGATCGGCTATGCTTCTAACT
CGCCTTGCCTCGTGAGCAAGGAAACTCTGGGCGACCTTCCACCTTTTGCGCACTGGGTTA
CCGTCTTCATATATTGGGCCGCCGGGCGGCTTAGTGGATAAGCCGTCCTGTCGGCCTTGA
CTCTTCACGTACTTGCCTATCCAGCGTTCCGCCTTTAAGTCGACATCTGGTGACCCGGCC
CATTAAGGCGGGTTATATCATGGGGTTATATCCCCAACAACAGCCTCCAGGTTTATTGGA
ATTTATTCATGCCAATCTCCACCACCTTAA

Homology of Contig U35_44170 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None