barSeed - Barley Seed Development Database

Probe CUST_5361_PI390587928

Source Contig U35_44181

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5361_PI390587928	Hv_44K_v2	TTCTGAGCTCTGACCCTGCCGCAAGCTGCCCCCTTTTATTGCTCCTAGCCTAGCCACCAG	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65292.3	1145	2e-24	328 - 387	100	60 / 60	plus	ABC41721 ABC41983
MLOC	MLOC_65292.1	2899	2e-24	2485 - 2544	100	60 / 60	minus	ABC41721 ABC41983
JLOC1	JLOC1_42957.1	2541	8e-25	2103 - 2162	100	60 / 60	minus
Harvest21	ABC41720	324	3e-25	17 - 76	100	60 / 60	plus
Harvest35	U35_44181	324	3e-25	17 - 76	100	60 / 60	plus

Contig Sequence (324 bp)

>U35_44181 324 Hv_44K_v2
GGAGGCGAGGTATCCCTTCTGAGCTCTGACCCTGCCGCAAGCTGCCCCCTTTTATTGCTC
CTAGCCTAGCCACCAGCCCTGGCCACGCTGCCGCTGGACGACGCCATCGCCCACCTGCAC
GCCGTCTTGGGGTGGTCCAGCAGCAGCCGTGGCCGGCCCGGCGCCAGGAAGCGGTGGCAG
CGCACTCGCCGGAGCGCGATGCTATGGGCAGCGCGCCTGTCCGGCTTCTTCTCCGCCGCC
ATGCTGATGGTGGTCTTGTCGCCGTCGCTGCAGTCCTTCCCGCCCGCCGAGGCCATCCGG
TCGTCGCAGTTCGACAGCCACGTC

Homology of Contig U35_44181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None