barSeed - Barley Seed Development Database

Probe CUST_5357_PI390587928

Source Contig U35_44194

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5357_PI390587928	Hv_44K_v2	ACGTAGATACAGTACATCGCACAATGTGGCCATGGGTGGCGTTGGTGCTGGTCGCGTTGT	37	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357759	2607	2e-24	18 - 77	100	60 / 60	plus	ABC18723
MLOC	MLOC_65069.1	433	2e-24	234 - 293	100	60 / 60	minus	None
JLOC1	JLOC1_42789.1	352	8e-25	235 - 294	100	60 / 60	minus
Harvest21	ABC41743	646	3e-25	38 - 97	100	60 / 60	plus
Harvest35	U35_44194	646	3e-25	38 - 97	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_44194 646 Hv_44K_v2
CCGGCACATCGTATCGATCGCTGCCGGCGCTTTTCTTACGTAGATACAGTACATCGCACA
ATGTGGCCATGGGTGGCGTTGGTGCTGGTCGCGTTGTGGGTCCTGCCGGTCGCGTCGGTC
GATGCTCCGGCGGCGTCCTACATTGTGCACATGGACAAGTCGGCCATGCCGAGCGGGTTC
TCGAGCCACCTGCGCTGGTACGAGTCCATGCTCGCGGCGGCCGCTCCTGGGGCAGACATG
TTCTACGTCTACGACCACGCCATGCACGGCTTCGCCGCACGGCTCCCTGAGGAGGAGCTC
GACAAGCTCCGGCGCTCCCCGGGGTTCGTGTCGTGCTACCGCGACGACGCGAGGGTGGTG
CGCGACACGACGCACACGCCCGAGTTCCTCGGCGTGAGCGCGGCCGGCGGGATATGGGAG
GCGTCCAAGTACGGCGAGAACGTGATCATCGGCGTAGTGGACACGGGAGTGTGGCCTGAG
AGCGCGAGCTTCCGCGACGATGGGCTCCCCCCGGTGCCGGCACGGTGGAAGGGCTTCTGC
GAGTCCGGCACCGCGTTCGACGCCCACCAAGTGTGCAACCGGAAGCTCGTCGGCGCGCGC
AAGTTCAACAAGGGCCTCATCGCCAACAACATCACCATCGCTGTCA

Homology of Contig U35_44194 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g36010.1	762	5e-92	protein\|OsSub47 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi2g24220.1	755	2e-101
Arabidopsis v10	None