barSeed - Barley Seed Development Database

Probe CUST_5356_PI390587928

Source Contig U35_44195

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5356_PI390587928	Hv_44K_v2	GGTGGGGTTCCTGGTGAACAAGCAGCCGGCGCTGGGCCGGCTGGGCATCCCGGCGTACGA	281	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372241	2395	2e-24	278 - 337	100	60 / 60	plus	ABC07032
MLOC	AK365575	2905	2e-24	278 - 337	100	60 / 60	plus	ABC05703 ABC07032
MLOC	MLOC_54544.1	3722	2e-24	738 - 797	100	60 / 60	plus	ABC05703 ABC07032
JLOC1	JLOC1_35110.1	3616	8e-25	699 - 758	100	60 / 60	plus
Harvest21	ABC07032	2799	3e-25	282 - 341	100	60 / 60	plus	ABC07032
Harvest35	U35_44195	341	3e-25	282 - 341	100	60 / 60	plus
Harvest35	U35_1801	2995	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (341 bp)

>U35_44195 341 Hv_44K_v2
GGAGGGGAGAGCCAGAGCACGCACGCTCGCACGCTAGCCAGCCAGCCAGCAGCAATGGCG
ACGGCGGCGCGCCCACCGTTCCTGGCCATGGCCGCGGCGGCGCTGCTGGTGGCGGCGTGG
TGGGGCGGCAATGCGGGGGCGGCGGAGGCGCAGGCGCAGGCGCCGGTGTTCGCGTGCGAC
GCGTCGAACGCGACGCTGGCGGCCTACGGGTTCTGCAACCGGAAGGCGTCGGCGTCGGCG
CGCGCCAGGGACCTGGTGTCGCGGCTGACGCTGGCGGAGAAGGTGGGGTTCCTGGTGAAC
AAGCAGCCGGCGCTGGGCCGGCTGGGCATCCCGGCGTACGA

Homology of Contig U35_44195 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None