barSeed - Barley Seed Development Database

Probe CUST_5354_PI390587928

Source Contig U35_3100

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5354_PI390587928	Hv_44K_v2	CCTGTTCCTGATTTGGATTTTGTTTTTGCCAGCTTATGGTCTTATCTGAACTATCAAAAA	1018	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.617	1.623	1.137	0.787	0.316	0.342
Raw	567.789	900.394	549.788	607.475	84.059	98.859

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368876	1074	9e-22	1020 - 1074	100	55 / 55	plus	ABC08338
JLOC1	JLOC1_42421.1	1028	1e-22	891 - 946	100	56 / 56	plus
Harvest35	U35_3100	1090	3e-25	1019 - 1078	100	60 / 60	plus

Contig Sequence (1090 bp)

>U35_3100 1090 Hv_44K_v2
AAGGAAAATCAACCACTAACCCCTCACGCAGCACGCAAGCCTTTCCCCCCATTCTCCGGC
GGCGGCAGCTATGGCGGCGGTGGCGGCAAGGTCCGGGCTCCGACGCATGTTCTCCATCGC
CGACTTCCCGACGCCTAACACGCGCATGTTCTCCATCTCGGCCTTCTCGCCGCCGAACCC
GCCCACGCCTCCCCCGAAGGCCGACCCCTCCCCCAACCTCTTCGTGTCCGGGTTAAGCAA
GCGTACAACAACTGATGGACTTAGAGAAGCTTTTGCAAAGTTTGGGGAAGTTGAACACGC
TCGAGTTATCACAGATCGTGTCACTGGTTTTTCTAAGGGGTTTGGCTTTGTAAGGTATGT
TACAGTTGAAGATGCAGCTAAAGGAATAGAAGGAATGGATGGAGAATTTCTGGATGGATG
GGTTATTTTTGCTGAATATGCCAGACCCAGACCACCGCCTCAGATGGGAGGGGCAACTCC
GCAGCCACAACAATCTTGGGGCTCTCCTTCTGGTTCATGGGGCTCGCAGTAGATGAAGGG
ACAATCATTCTATTCTATCTGGCTGTGCGTCTGACAGCGTATCAACCAGCCATCGCATTC
TACATTTAGATTATAGCCACATCGTTTTGTCCCAGGTGTGAACACCGTTGCCTGATCCAA
TATTCTCGTCGTGTTGGACCGGTCGTTTACGGCCTCCACATGGAGAAGCACTTGTGGAAC
CTTATATGGACCAAGCAGGTATTACTGTCAGCATGCAACAGCTTGGGACCATTGCTAATA
ATGTCTTGTTCCTGTGGGTGTCCTTGTTATGTCAAGAATGTCCCTTTTATTTGAATTCGT
CTCGTAAGCCTTATCAGCTGCTGATGGCATGTGCTGCTCTTGTACTGCTGGATAATGACT
TGTAGCTTGGATGAAGAACACGTTTGCAAGCGAATCTCGAACTGAATTCCCCTTGATCTA
ATCCGTTCAGGGGATGGCGACAGGGATCTGTGCAGCGCATGCGTCTGTGTACCGCGTGCC
TGTTCCTGATTTGGATTTTGTTTTTGCCAGCTTATGGTCTTATCTGAACTATCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_3100 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g04440.1	142	4e-51	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi3g14640.1	154	6e-61
Arabidopsis v10	None