barSeed - Barley Seed Development Database

Probe CUST_5348_PI390587928

Source Contig U35_3106

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5348_PI390587928	Hv_44K_v2	GTCTAGTACCTGTGAATGTGATCATCTCATGTCATGTGTTTGCGCTACAAGTTGACCTTT	1326	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79278.2	1310	2e-24	1146 - 1205	100	60 / 60	plus	ABC07383
JLOC1	JLOC1_52816.1	1352	8e-25	1146 - 1205	100	60 / 60	plus
Harvest21	ABC07383	1409	3e-25	1327 - 1386	100	60 / 60	plus	ABC07383
Harvest35	U35_3106	1409	3e-25	1327 - 1386	100	60 / 60	plus

Contig Sequence (1409 bp)

>U35_3106 1409 Hv_44K_v2
CTCCACCCTTCCAATCCGTCTTCCCCTCCCCCTCCACTGTCCCCTCCACTCTCCGCCGCT
CCAACCCGCGCCCCCTTCCTCCTCCCGCTACCCGCCTCCGCCCCCGCCACCGCCTCCGCT
GCTGCTGCTCCACGGCGGAGATGGTCAAGGCCATCAGGGTCCACGAGCTCGGCGGCCCCG
AGGCGCTGCAGTGGGAGGAGGTGGAGGTGGGCGAGCCGGGGGACGGCGAGATCCGGGTCC
GGAACACCGCCATCGGCGTCAACTTCATCGACGTCTACTTCCGCAAGGGCGTCTACCCCG
CTTCCCTCCCCTTCACCCCCGGTATGGAAGCTGTTGGTGTGGTGACCGCTGTAGGGCCTG
GCCTGACCGGTAGGAAAGTCGGGGATGTCGTCGCGTACGCAGGCAAGCCTATGGGCTCGT
ATGCTGAAGAGCAGATTATTCCAGCCAATGTTGCTGTTCCTGTCCCGCCTTCAGTAGATC
ACAAGACAGCGGCTGCCATCATGCTCAAGGGGATGACTGTTCATATGCTAGTTCGCCGCA
TATTTAAGGTTGAGACCGGCCATATTGTTCTCATCCACGCTGCTGCTGGTGGAGTTGGGT
CACTCCTTTGTCAATGGGCGAACGCCCTTGGTGCTACTGTCATTGGAACTGTTTCAAATG
AAGAGAAAGCCTCACTTGCACATCTAGATGGATGCCACCATGTGATCATGTACACAAAGG
AAGATGTTGCAACCAGAGTCAAGGAGATTACAGGTGGAAAAGGTGTAAATGTGGTCTATG
ATTCTGTTGGAAAGGACACATACAAGGCATCCCTGGAGTGCCTGGCGCCCCGCGGTTTCC
TGGTGTCGTTCGGGCAGTCCTCGGGCTCGCCCGACCCGATCTCCATGGGCGACCTGGCGT
CCAAGTCGCTGTTCCTGACGAGGCCGAGCATGATGCACTACACGGGCACCCGCGACGAGC
TGCTGGAGGCGGCGGGCGAGGTGTTTGCCAACGTGGCCAACGGGGTGCTGCACACCCGCG
TGAGGCACACCTACCCGCTGTCGGAGGCGGCCCGCGCCCACGCCGACCTCGAGGCCCGGA
AGACCTCGGGGTCCGTACTGCTGATCCCGTAGAACTAAGCACCGTCGTCTTTTCGGTAGG
AGAAGAAGGAATAAACAGGGGGCTCGACGATGTTTGTGCTCTACAATCCACATGCATGTA
AATATGTTGGCAGGAGTTGGAGTTGCATCTGAACACTGATTCCTCTTATCTGTCTGTCTC
ACCTGGTTATGTTGGATTCAGTATGAATGAGTTGGATTGCGTGGAATTGTTGTGCACATC
ACAACTGTCTAGTACCTGTGAATGTGATCATCTCATGTCATGTGTTTGCGCTACAAGTTG
ACCTTTTTTTTTATGCCTGTCCCTGTCCC

Homology of Contig U35_3106 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01190.1	373	9e-172	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi1g78420.1	324	0.0
Arabidopsis v10	AT5G61510.1	406	6e-153	GroES-like zinc-binding alcohol dehydrogenase family protein \| chr5:24737084-24738975 REVERSE LENGTH=406