barSeed - Barley Seed Development Database

Probe CUST_5347_PI390587928

Source Contig U35_3107

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5347_PI390587928	Hv_44K_v2	CTCCAGACACGGTACTATACAGAAATTGCGGATACTGTATTATGTATTGTATTACCATTA	1215	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5735.2	1514	2e-24	57 - 116	100	60 / 60	minus	ABC07837 ABC31641
MLOC	MLOC_5735.1	793	2e-24	65 - 124	100	60 / 60	minus	ABC07837
JLOC1	JLOC1_3706.1	1475	8e-25	142 - 201	100	60 / 60	minus
Harvest21	ABC07837	1300	3e-25	1203 - 1262	100	60 / 60	plus	ABC07837
Harvest35	U35_3107	1314	3e-25	1216 - 1275	100	60 / 60	plus

Contig Sequence (1314 bp)

>U35_3107 1314 Hv_44K_v2
ATCCATTGCTCAGGCGAAAAGCTACAAGCTAGCATCCAAGGAGAAACCACACGTAATACA
TTTGATTGGGAGGCAAGAAGATGGAGGGGCAGACGAACAAGAGGCTGGCCACGCTGGTGG
GCTGCAACTACGTGGGCACGCCCTACGAGCTCCGCGGCTGCATCAACGACGTCGACGCCG
TGCGGGACACCCTCGTCGCCCGGTTCGGCTTCGCACCGGCCGACGTCGCCGTGCTCACCG
ACGTGCGCGGCGCAGAGGTGCTCCCGACGGGGGCCAACATCCGGCGCGCGCTGGCGGACA
TGGTCGCCCGCGCCGCCCCCGGGGACGTGCTCTTCTTCCACTACAGCGGCCACGGCACGC
TCGTCCCGCCGCAGCACGGCGAGGGCGGCGCGGAGAAGGAGGCGATCGTGCCGTCCGACT
TCAACCTCATCACGGACGTGGACTTCCGGCTGCTGGTGGACCGTGTGCCGCCGGGCGCGA
GCTTCACCATCGTGTCCGACTCGTGTCACAGCGGCGGCCTCATCGACCAGGAGAAGGAAC
AGATCGGGCCCTCCGTCTGCTTCGACTCCGGCGCCCCGCCCACGCGCACCGCCCGGTTCG
TTCCCTACGTCGCGCTCCTCGACCACCTCTCGGCCATCTCGGGCATGCCTTCCTCCATTC
ACATCGCCGACCACCTCGTGGCACTCTTCGGCGCTGATGCCAGCGCCAAGTTCCACGCTC
ACGGCCGCAGCGGCAATGGCAGCACCCTGTCCACCGCACTGGCACCGGCATCGGCGCCAA
CGCAGCCGCGCCCGGACGAAGGCATCCTGCTGAGCGGGTGCCAGACGAACGAGACCTCCG
CGGACGTGCCGTCGTACGAGGCCAGCGGAGGCAAGGCATGCGGGGCGTTCAGTAGCGCGG
TACAGAGCGTGCTGGCGGCGCACCCGGCGCCGATGAGCAACCGGGAGCTCGTCGCGAAGG
CCAGGGCGGTGCTGAACGAGGTGGGTTTCGAGCAGCACCCATGTCTCTACTGTACGGACG
CCAACGCCGAGGCACCGTTCCTTTCGCAGGGTAAGGAGGAGGCAGCGGTGGGCGCGGCGC
TGCTGTAGAGCACCTTCAGCTCACGTACTACGGAGCGGGCAATGTGTTTCATGTGTCGTG
TTTTATGTTTCATGTTTGGATGAGGAGCCAAACTCAAGTGCTTTATTGTTTGTGTGTGGG
TACAGATCTCCACATCTCCAGACACGGTACTATACAGAAATTGCGGATACTGTATTATGT
ATTGTATTACCATTATATATACACCGATTTGTTATCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3107 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04010.1	342	3e-148	protein\|ICE-like protease p20 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g50480.1	352	5e-136
Arabidopsis v10	AT5G04200.1	325	2e-101	\| Symbols: AtMC9, MC9 \| metacaspase 9 \| chr5:1153893-1154870 FORWARD LENGTH=325