barSeed - Barley Seed Development Database

Probe CUST_5343_PI390587928

Source Contig U35_3111

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5343_PI390587928	Hv_44K_v2	AATGGAGTCGGAATAAGATGAGCTATAGCCTAGCTCATGCTTTGCTTACCTTTTAAAAAA	1261	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.334	4.386	1.145	0.690	0.238	0.368
Raw	1084.290	2328.305	492.775	500.236	57.588	96.833

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64724.1	926	3e-22	849 - 904	100	56 / 56	plus	ABC10338
JLOC1	JLOC1_42527.1	833	1e-22	726 - 781	100	56 / 56	plus
Harvest21	ABC10338	1352	5e-23	1241 - 1296	100	56 / 56	plus	ABC10338
Harvest35	U35_3111	1373	3e-25	1262 - 1321	100	60 / 60	plus

Contig Sequence (1373 bp)

>U35_3111 1373 Hv_44K_v2
AACCCGAAAACCAGAGGAAAATCACTGAACTATGAGTGGAGAGCTAAACAGAGACTACGA
GATTGGCGAGGAGATCGGCCGCGGGCGGTTCGGCGTCGTCCACCGCTGCACGTCGCGCTC
CACCGGAGAGGCCTTCGCCGTCAAGTCCGTCGACCGCTCCAACCTCTCCGACGACCTCGA
CCGCGAGCTGGCGGAGATCGAGCCCAAGCTGGCCCAGCTCGCCGCCGCGGGGAACCCGGG
CGTCGTCCAGGTGCACGCCGTCTACGAGGACGACTCCTGGACCCACATGGTCATGGACCT
CTGCTCCGGCCCGGACCTGCTCGACTGGGTCCGCCTCCGCCGCGGCGCGCCCGTCCCGGA
GCCCGTCGCCGCCGACATCGTCGCGCAGCTCGCCCAGGCGCTCGCGCTCTGCCACCGTCG
CGGGGTTATCCACCGCGACGTCAAGCCCGACAACGTCGTCCTCGACGTCGACGACGAGGG
CGAGAACGGCTCCCCGCGCGCGCGGCTCGCGGACTTCGGGTCGGCCGCGTGGATCGGCGC
CGACGGCGGCCGCGCCGAGGGACTCGTGGGCACCCCCCACTACGTCGCGCCCGAGGTTGT
GTCCGGCGGCGACTACGGCGAGAAGGCGGACGTGTGGAGCGCGGGCGTGGTGATGTACGT
GCTGCTCTCCGGCGGCGCCCTCCCCTTCGGCGGCGAGACGGCGAAGGACGTGCTCTCGGC
CGTGATGCGGGGCAGCGTTCGGTTCCCTCCGAGGCTGTTCTCCGGCGTGTCTCCGGCCGC
CAAGGACCTGATGAGGCGGATGATGTGCCGCGACGAGTGGAGACGCTTCTCCGCCGAGCA
AGTCCTCCGCCACCCGTGGATCGTGAGCGGCGGAGGAGCCCGAGCGATGGAGCAGCCAAC
CTGATGAACGGCCGCCGGATCCGAGACTTCGCCAGAGCAGATCGAGGCAGATTTAGAGCG
TGCCGCCCGTGGGGCCCCGGCTCTGCAGAGAAGTAGAGAGATAGTCGGCGATCGAGACGC
ACCGGCCGACGGCGTCGATACGGTTTTTGTACAAAAGGCCGGGCGCGCAGATACATACGC
TAGTAGTATCGCGCTACGGCGGTAGATCGAGTGAAGAAGCAGTAGCAGCTAGCTCCATCT
TTATCTAGAGGGCGCCTTAATTTGTTTTCTCCTTGTTGTGTGCGGTGCTGCATGATGGAT
GATGATGCAGCAGCAGCAGGTTTTGTACTGTGTATATTCTAGTGTACGTCTTGTACAAAC
TAATGGAGTCGGAATAAGATGAGCTATAGCCTAGCTCATGCTTTGCTTACCTTTTAAAAA
AAAAAAAAATCAATTCAAGCTTTGTCATGTACGTNNAAAAAAAAAAAAAAAAA

Homology of Contig U35_3111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g41580.1	306	2e-178	protein\|CAMK_CAMK_like.14 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi3g49220.1	293	0.0
Arabidopsis v10	AT1G08650.1	284	3e-76	\| Symbols: PPCK1, ATPPCK1 \| phosphoenolpyruvate carboxylase kinase 1 \| chr1:2752206-2753232 FORWARD LENGTH=284