barSeed - Barley Seed Development Database

Probe CUST_5342_PI390587928

Source Contig U35_3112

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5342_PI390587928	Hv_44K_v2	GTCTGTCTGTCTGTTGTAGATGTAGTAGCGGAAAGAAACTCCCGTGCTGTTTGTAGTTGT	384	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252610.1	1768	2e-24	1451 - 1510	100	60 / 60	plus	ABC07312 ABC32563 ABC43434
MLOC	MLOC_10826.4	967	2e-24	169 - 228	100	60 / 60	minus	ABC07312 ABC43434
MLOC	MLOC_10826.1	1840	2e-24	260 - 319	100	60 / 60	minus	ABC07312 ABC32563 ABC43434
MLOC	MLOC_10826.2	1921	2e-24	260 - 319	100	60 / 60	minus	ABC07312 ABC32563 ABC43434
MLOC	MLOC_10826.3	881	2e-24	178 - 237	100	60 / 60	minus	ABC07312 ABC43434
JLOC1	JLOC1_7114.3	2281	8e-25	1893 - 1952	100	60 / 60	plus
JLOC1	JLOC1_7114.2	2254	8e-25	1866 - 1925	100	60 / 60	plus
JLOC1	JLOC1_7114.1	2227	8e-25	1839 - 1898	100	60 / 60	plus
Harvest21	ABC40269	583	3e-25	276 - 335	100	60 / 60	minus
Harvest21	ABC07312	590	3e-25	253 - 312	100	60 / 60	plus	ABC07312
Harvest21	ABC07311	443	1e-24	385 - 443	100	59 / 59	plus
Harvest35	U35_3113	588	3e-25	253 - 312	100	60 / 60	plus
Harvest35	U35_3112	444	3e-25	385 - 444	100	60 / 60	plus

Contig Sequence (444 bp)

>U35_3112 444 Hv_44K_v2
TGCTGAGCAGCCATCTGCAAGGTTACTGAAGCACATAATCCGCTGCTACCTCAGGCTGAC
AGAGAACCAGAGGGCTTGCGCCGCGCTCAACAGCTGCCTCCCCACCGTGCTGAAGGACGG
GACATTCAACAGCTTCCTTCATGATGATAACGTGACGAGGCGGTGGCTCCAGCAGCTGCT
GAGCAACATGTCGATCGCCGGCATGGGCGGGGGAAGCTCTCACGCTGGCATGGGCGGAGG
AGGCTCTCTCGGAGGCATGGGCGGAGGAGGCTCTCTCGGAGGCATGGGCGGNGGAGGCCC
TCACGGGGGCCTCGACCACCTCATGGGGCTATGAGCAAGCGAGCGAAGCTGTGTCTGCAG
GCTGTGTGAGAGCCTGAACCATGTGTCTGTCTGTCTGTTGTAGATGTAGTAGCGGAAAGA
AACTCCCGTGCTGTTTGTAGTTGT

Homology of Contig U35_3112 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None