barSeed - Barley Seed Development Database

Probe CUST_5341_PI390587928

Source Contig U35_3113

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5341_PI390587928	Hv_44K_v2	GTTCCAAAGGATGAAGAGGGACAGCAAGTTATAAAACTGAAACATGGCAGTTTTACAAAA	514	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10826.1	1840	7e-23	1 - 57	100	57 / 57	minus	ABC07312 ABC32563 ABC43434
MLOC	MLOC_10826.2	1921	7e-23	1 - 57	100	57 / 57	minus	ABC07312 ABC32563 ABC43434
MLOC	AK252610.1	1768	3e-22	1713 - 1768	100	56 / 56	plus	ABC07312 ABC32563 ABC43434
JLOC1	JLOC1_7114.3	2281	4e-23	2155 - 2211	100	57 / 57	plus
JLOC1	JLOC1_7114.2	2254	4e-23	2128 - 2184	100	57 / 57	plus
JLOC1	JLOC1_7114.1	2227	4e-23	2101 - 2157	100	57 / 57	plus
Harvest21	ABC40269	583	3e-25	14 - 73	100	60 / 60	minus
Harvest21	ABC07312	590	1e-23	515 - 571	100	57 / 57	plus	ABC07312
Harvest35	U35_3113	588	3e-25	515 - 574	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_3113 588 Hv_44K_v2
TCTCGGAGGCATGGGCGGCGGGGGCTCTCTTGGAGGCATGGGCGGAGGAGGCTCTCTTGG
CGGCATGGGCGGGGGAGGCTCTCTCGGCGGTGGCATGGGCGGCGGGGGCTCTCTCGGCGG
TGGCATGGGCGGCGGGGGCTCTCTCGGCGGCATGGGTGGAGGAGGCCCTCACGGGGGCCT
CGACCACCTCATGGGGCTATGAGCAAGCGAGCGAAGCTGTGTCTGCAGGCTGTGTGAGAG
CCTGAACCATGTGTCTGTCTGTCTGTTGTAGATGTAGTAGCGGAAAGAAACTCCCGTGCT
GTTTGTAGTTGTTTGTGTTGTCGAAAAAGGAAGAACAGAGTCGTCTGTCTGTCGGTCCGT
GTGCCCTTTGTGGGAAGAAGAAAGAAGAAGAAGAAGAAGATAGTAGTGGCCTGGTGTCTA
GATGTTTTGGTGGTGCTTTGGGTTTTGCTGGACTGCATGTAAAAAGACAAATAAACCGGC
GCAGAAGCTCTCCCTGCTCTGCTCTTTGGCAAGTGTTCCAAAGGATGAAGAGGGACAGCA
AGTTATAAAACTGAAACATGGCAGTTTTACAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3113 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None