barSeed - Barley Seed Development Database

Probe CUST_5338_PI390587928

Source Contig U35_3116

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5338_PI390587928	Hv_44K_v2	TCACTAGCTCGGGTTATGTTCATGGTTAAGGCAAGAAAATCCCAATCAACATTGAAAAAA	1612	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.342	1.533	1.188	0.939	0.339	0.384
Raw	915.904	1616.852	1111.639	1351.899	172.745	214.900

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_52249.1	923	5e-22	777 - 831	100	55 / 55	plus
Harvest21	ABC07569	1683	3e-25	1613 - 1672	100	60 / 60	plus	ABC07569
Harvest35	U35_3116	1683	3e-25	1613 - 1672	100	60 / 60	plus

Contig Sequence (1683 bp)

>U35_3116 1683 Hv_44K_v2
CCAGCCACTCGAGGCACTCAGCTAGTAGCGAAGGCGAAGCAGGCGGCGGCGCATCGAGCG
ACTGCGGCGGCGCGGAGCCGGTGACGGAGGGGGCGAGGCGCAGCGAAGTCGATCCGCGAA
CTTCTCGAGCCGTTTTCTGCGGAGGGTTGCGTCAATAGCACATGACCTGCTAAAACCCTA
GCGCGAGCAGCGGGAAGGGAAGGGAAGGAACTCCGATCCCCTGGCCGTGACCACCGCGGC
GCCGCCATGAAGCTGACGGTGAAGACTCTCAAGGGCACCCACTTCGAGATCCGGGTCCAG
CACAATGACACCATTATGGCTGTCAAGAAGAACATTGAAGAGATTCAAGGAAAGGATAGT
TATCCATGGGGTCAACAACTACTGATTCACAATGGCAAGGTTTTGAAGGATGAAAGCACA
TTGGATGAGAATCAAGTTGGCGAAGCTGGATTTCTAGTTGTCATGCTTAGTAAGAGTAAA
GCTTCTGCTTCCAGTGGAGGTTCATCTGCCCAGCCTTCAAGCACTCCTGTTACCAGTCAA
GCGCCTCCAGTTGCTCAACCACAAGCTCCTCAGCCCCAAGTCCCATCAACTACGACTTCT
CAGCCTGAAAGACCACCTGCAGAGACCCCTTTGAGCACAGTTGATATTGCAGCATCGGAT
TTACTGTCAGGAAGCAATCTGGACACAATGATTAACCAGATAATGGAGATGGGGGGTGGC
AGTTGGGATAGAGATAAGGTCCAAAGAGCTCTCCGTGCAGCCTATAACAATCCAGAACGT
GCCATTGACTATCTGTACTCTGGTATTCCCGTGACAGCCGAAGTTGCTGTTCCGGTGGTT
GGTCAAGGGGCAAACACCACTGCTGCAGCTCCTGGAGAAACTGGCCTCTCTGGAATCCCA
AACACAGCACCGTTGGATCTTTTCCCGCAGGGGGCTTCCCATGCTGGAGGTGCTGCTGGT
GGTGGATCACTTGATTTTCTTCGAAATAACCAACAGTTTCAAGCACTTCGGGAAATGGTC
CATACAAATCCACAAATTTTACAGCCTATGCTCCAGGAATTGAGCAAGCAGAATCCTCAA
CTTCTAAGGTTGATTCAGGAGAACAATGATGAGTTCCTTCAGTTACTAAATGAGACATTT
GAAGGCGGCGATGGGGACTTCTTAGACCAGGCTGACCAGGATGAAATGCCTCATGCTATC
AGTGTGACACCAGAAGAGCAAGAGGCAATTGGAAGGTTGGAAGCCATGGGGTTTGAGAGA
GCACGTGTCATCGAAGCATTCTTCGCCTGTGACAGGAATGAGCAACTCGCTGCAAACTAT
CTTCTTGAGCATGCTGGTGACGAAGAATAGAGAACATTTAGTTCACATTGGAGCTTGTTA
TGAACATCTGACCCAAATTGATGGTGACTGACGAATGGCTACACAGGTTGAGATGGAGCT
AATGCTCGATTGAACTTATTATCTGTATGCACAACACCTTAGGTTACTTGCATTGCGAAT
TTGAAAAAACTTGTAGAATGAGCAAATTTATTGGGAGCTATCGGTGGAGTGCTGAAATGT
TGTTTCCTTTTGTTGTGTGATCATTATCCATTCGCTTGGGTTATATGTGTCATCACTAGC
TCGGGTTATGTTCATGGTTAAGGCAAGAAAATCCCAATCAACATTGAAAAAAAAAAAAAA
AAA

Homology of Contig U35_3116 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g08300.2	370	2e-172	protein\|RAD23 DNA repair protein, putative, expressed
Brachypodium v1_2	Bradi3g05920.1	369	0.0
Arabidopsis v10	AT1G16190.1	368	1e-129	\| Symbols: RAD23A \| Rad23 UV excision repair protein family \| chr1:5543267-5545892 FORWARD LENGTH=368