barSeed - Barley Seed Development Database

Probe CUST_5334_PI390587928

Source Contig U35_3120

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5334_PI390587928	Hv_44K_v2	CTATTGCATAGTTAGCCAATTACCTCTCTATAAGAAAGTTACCCAAACACTCTGCAAAAA	1014	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.472	1.467	1.052	0.952	0.426	0.418
Raw	492.780	780.083	481.996	685.923	106.708	116.121

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356093	1155	2e-24	1030 - 1089	100	60 / 60	plus	ABC08129
MLOC	MLOC_61110.4	986	2e-24	846 - 905	100	60 / 60	plus	ABC08129
MLOC	MLOC_61110.1	1524	2e-24	1384 - 1443	100	60 / 60	plus	ABC08129
MLOC	MLOC_61110.2	1531	2e-24	1418 - 1477	100	60 / 60	plus	ABC08129
JLOC1	JLOC1_39911.1	1144	8e-25	1000 - 1059	100	60 / 60	plus
Harvest21	ABC08129	1088	1e-23	1015 - 1075	98	60 / 61	plus	ABC08129
Harvest35	U35_3120	1135	3e-25	1015 - 1074	100	60 / 60	plus

Contig Sequence (1135 bp)

>U35_3120 1135 Hv_44K_v2
CCCGCAGGTTTGTGTGCGCGCCCTCCTCCTCTCGCGCCCGGAGCTCAGATCGCCGCAGAT
TCCTTGCCCTCCGCGCAGCGGCCTCCCCCCTGGCTCCGCGCGCCGTCTAGGGATCCCGGC
TCCTCCTCCGCGGTGACCTATGGCTGCTCTTCTGGCGCCCGCCATCTCCGGCGAGGTCGG
TTTGCGGCTTTTACTGGCACCACTAAGCTCAAATGTTGTCGTTCGCACAGCCAGTTGTGC
AGTGGGCATCGGTCTGCCTGTATACTCCACTTACAGGGCTATTGAAAAGAAAGATCAAGA
TGAGAAAGAACGGCTGCTCCTTTATTGGGCAGCATATGGATCTTTTAGCATTGTGGAATC
CTTTGCTGATAAGCTTGTTTCAAGTGTTCCTCTCTATTACCATGCGAAATTTGCTGTCCT
TATATGGCTCCAGTTTCCTTCAAATGGTGGATCAAAGCATGTGTACAGAAGATACCTGCG
CCCGTTTTTCCGGAAGCATCAAGCAAAAATTGATAGAATCCTGAATATTTTGTCCAAGGA
ACTTACGAAGTTTGTGAGCAACCATGAAGATGAAATTCGTTTTGTAGAGAACATGGCCAT
CAGGGGTGCTACAACAGCAAGTTACATTGTAAATGGGCTTGACCAACCTGGACAATCAGA
AGAAGTTAGCGTGACTGAAGACCCAAATTCAACTCCAACAGAAGAGCCAGACACACCTAG
GAGTTGAAACCTGAGCTTGGTTGCCACCCCGCAAGATGTGTCTGAAGAATTCGGATCCGT
TAGAAATGTGAATATGTGTTTCTGAACAAGTCGGATACGTTTCAAGCTATAGGAGTGGAT
ACTGTCCACTTGTATTAGAATACTCCTCGTACTATGGTGCTACAAAAGTTGCAGCACAAG
TTTGTGGGTGACTGTTCGAAATCGACTCGAGTGTTACATGCACATTTATTTTCATACGCT
GTTGGATTGCCAATACTCTTGTTATCATGCTTCGTGCAAGTTGCAGCCATGCTTCTATTG
CATAGTTAGCCAATTACCTCTCTATAAGAAAGTTACCCAAACACTCTGCAAAAAAATGTA
CACTGCCTGATCATATGATTTATGTATGTATGGTGGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38100.1	195	2e-97	protein\|HVA22, putative, expressed
Brachypodium v1_2	Bradi1g24260.1	200	9e-118
Arabidopsis v10	AT4G36720.1	200	1e-56	\| Symbols: HVA22K \| HVA22-like protein K \| chr4:17307769-17309668 FORWARD LENGTH=200