barSeed - Barley Seed Development Database

Probe CUST_5331_PI390587928

Source Contig U35_3123

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5331_PI390587928	Hv_44K_v2	CTTTTCGTTGTATCATCGACGGGGAGAAAGCTGGAGTATCTTTTCGTTGTAAGCTGTAAA	728	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12438.1	1107	2e-24	11 - 70	100	60 / 60	minus	ABC09177 ABC09197 ABC41455
MLOC	MLOC_12438.2	1517	2e-24	8 - 67	100	60 / 60	minus	ABC09177 ABC09197 ABC41455
JLOC1	JLOC1_8344.1	1729	8e-25	1300 - 1359	100	60 / 60	plus
Harvest21	ABC09177	1003	3e-25	918 - 977	100	60 / 60	plus	ABC09177
Harvest21	ABC09176	1247	3e-25	1102 - 1161	100	60 / 60	plus
Harvest21	ABC41455	603	1e-23	66 - 125	98	59 / 60	minus	ABC41455
Harvest35	U35_3124	1363	3e-25	1136 - 1195	100	60 / 60	plus
Harvest35	U35_3123	815	3e-25	729 - 788	100	60 / 60	plus
Harvest35	U35_44039	603	1e-23	66 - 125	98	59 / 60	minus

Contig Sequence (815 bp)

>U35_3123 815 Hv_44K_v2
GGCCGGTGCATCTACCTAGTTGGAATGATGGGTTCGGGGAAAAGCACGGTGGGGAAGATC
TTGGCTGAAGTTTTGGGTTATTCGTTCTTTGACAGTGATAAATTGGTCGAACAAGCTGTT
GGCATGCCTTCAGTTGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTCAGGGATAAT
GAGAGTAGTGTCTTGAGGGATTTATCCTCTATGCGGCGATTAGTTGTTGCAACTGGAGGT
GGTGCTGTTATCCGACCAGTTAACTGGAAAAATATGAAGAAGGGACTATCTGTTTGGTTG
GATGTGCCCCTGGAGGCTCTTGCAAGGCGTATTGCTAAAGTGGGGACTGCCTCGCGTCCT
CTTCTAGATCAACCATCCGGTGATCCATACACAATGGCCTTTTCAAAACTCAGCACCCTC
GCGGAGCAAAGGGGTGATGCTTATGCAAATGCTGATGTCAGAGTTTCTCTCGAAGAGATT
GCAGCTAAACTAGGCCATGACGACGTCTCTAAGCTGACACCAATCGATATTGCTCTCGAG
TCGCTCCACAAGATCGAGAGCTTTGTCGTCGAAGACAACGTCGCCGACTCACAAACAGAG
CCGCAGGCTGAAAGGATGCATACGCTGTAGGATGTTTATCCTTTTTGTAACATGTAGTGC
GCGGCCTAGCGCCGTCGAGTTTGAGTTGTTCGTTCGTTGTATCATCGACGGGGAGAAAGC
TGGAGTATCTTTTCGTTGTATCATCGACGGGGAGAAAGCTGGAGTATCTTTTCGTTGTAA
GCTGTAAAAAAAGCGGAACAATAAGGGAGCTAATA

Homology of Contig U35_3123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51410.1	309	2e-125	protein\|shikimate kinase, putative, expressed
Brachypodium v1_2	Bradi3g59237.3	306	6e-135
Arabidopsis v10	AT2G21940.4	304	4e-76	\| Symbols: SK1, ATSK1 \| shikimate kinase 1 \| chr2:9351106-9352881 FORWARD LENGTH=304