barSeed - Barley Seed Development Database

Probe CUST_5322_PI390587928

Source Contig U35_3132

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5322_PI390587928	Hv_44K_v2	TTTCATCAACGCTGTAATTCTTGCCCTTTGCTGCGAGTATGATTAATGAATTGCACATGC	2229	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250546.1	2250	2e-24	2191 - 2250	100	60 / 60	plus	ABC11222
JLOC1	JLOC1_30638.1	837	8e-25	752 - 811	100	60 / 60	plus
Harvest21	ABC11222	758	3e-25	23 - 82	100	60 / 60	minus	ABC11222
Harvest35	U35_3132	2311	3e-25	2230 - 2289	100	60 / 60	plus

Contig Sequence (2311 bp)

>U35_3132 2311 Hv_44K_v2
CTAAGCTCCCCTTTCTCTCTCCCCGTCTCCTCCCTCCTCTGCCGCTTTGCTTCCGTCACC
AGCACGCCGTACTCTTCCACCTTTCCCCTTCCTTCCTCGCGTCGTTTTCTTTTCCTCCGT
CTGCCCGCCCGTCGGCGTCATCCTCACCCGAATCCCGCAACCAAATTTCGAACTCGCCAC
CGCCCAAAAAGGATCCCACCTCCACGGGATCGAAACCAACAGCCTCGATCCATCCAGCTC
CTTTTTCTCAAGCCACAAGGGGGTTAAAACCCTAGCTGAATTGGTCCTTCCGCCATCTGG
CCGCTGCCAGTTGCGTGCTCCGGAGGCTTCCAGCTCGTGTTCGTTGGACGGCGGCGGCGT
GGTTGCGTGGGGGAGCCAGGCTCTCGGGCGATCCTGGGAGCCGCGCGCGCATGAGAGTAC
CGCAGATGACAAGGGTCATCCATGACTCCGGAGAAGGCATGCAGAAAGATGCACTTGACA
TGGTATCATCCGATGTTAACTTCCCTAAGGGCCACTTTCCAGACTACAGGATTGGGCCAA
ACAACCAAATCATTGACCCAGAGGAGACGCACGAGGTTGTGCCTTTGAAGGAGATTGTTG
CGAAAGAAACAACACAACTGCTAGAGCAGCGAAAGCGGCTATCAGTGCGTGATCTCAGGG
AGAAGTTTGAAAAGGGTCTGTCTGGTGCCTCCAAGTTGTCTGATCAGGCTAAGCGGCGAG
AAGCAGCTTCACTGGACAGGCAGGTTCTTCTGAAGAAGCTCAGAGATGTTCTAGACACGC
TGAAAGGCCGTGTGGCTGGTCGAAACAGAGATGATGCTGATGAAGCTATCTCGCTGGTGG
AAGCACTAGCAGTTCAACTTACTCAAAGAGAAGGAGAATTAATTTATGAGAAGGCTGAAG
TAAAAAAGTTGGCTAGCTTTCTCAAGCAGGCTACTGAAGATGCCCGAAAGGTAGCCGAAG
AGGAAAGAGCTCTTGCACTTGCTGAAATTGAAAAATCTAGAGCTGCAATAGAAAAAGTTG
AGAAAGCGTTGCAGGAGCATGATTCGGCATCAAGTAGCAGAGAGAAGGAGGAGATAGAGG
AACTTAGGAAAGAGATTCGGGAGGCTAGACGAATAAAAATGCTACACCAGCCAAGCAAGG
TAATGGACATGCAGTTTGAGCTTCAGGGATTGCGTACACTCATATCAGAGAAAACACAGC
TTTGCAACCAGTTAAAGAAAGAGCTTGCCATGATCAAGAGGCTTGAACAAGATAGCTCTA
AACTCTTTGAGCTTGAAGGTTCTGATACTCTTGGATCACAGTTTCGTATTGTCCCTCGAG
TTGATGGTGCTCCAGACATCTCAAGCTGTCCAGCTCAGTGGTACCGTGTAATTTCTGGAG
GCAACAGAGAGCTCATATCGGGTGCAACGAAACTTACTTATGCTCCAGAGCCATTTGATG
TTGGCCAATTGTTGCAAGCAGAAATAATTTTGAAAGCAGATAAAGTTACGGTTCAGACAG
ACTGCCCTATAAATCCTGCTTCAGGACTGGAACATTATGTGGAGTCGCTAATGAAAAGGG
CAGATATTGAGTTCAATGTGGTCGTCACCCAAATGAATGGGAATGACTACGCATCAAAAT
CCGTCCATGTATTTCATATTGGAAAGCTGAGAGTAAAGCTTCGGAAAGGAAGGTCTACAA
AAGCAAGGGAGTCATATTCCACCACGATGAAGCTGTGTGGAAGCCGTGGTGGTGGTAATG
CTGCGGCCTGTGCAGTCTTTTGGCAAACTAGGAAAGGCCTATCGTACACTTTAGCTTTCG
AGACAGACAGGGATAGGAATGCTGCGATTATGCTCGCTCGGAAATTTGCTTCCAATTGCA
ACGTTGTTCTCACTGGACCAGGCGATCAAGTCCACGGCGGTGGCTGATAAACCAATCACG
CCTCTGGCTCGACAGCGCTGCGTATGTAATTAGGTTGTGCATTTGGGTGCTTGTCTATCT
ATTTGTGAGATTAGGAGGTTTGTACACGAGGAGGCTTTCCCCTTTGGACGCGTCCTGTGA
AGGCAATCTTTTTATTTGCCTGCGTGCAGCTGTTAGCAAATGCTCTAAAGATGTGCAGCA
CACGTTGATTCTATATTGTGTGTTACATATTCGTGACAGCTGAGAGAGAAAAAGGAAAGA
GGCCTTTTAGTGCAGTGCTCAGGAGCTTTCCTTGAGTTATTATCAAGAAATGTACAGATG
AGAGAACCGTTTCATCAACGCTGTAATTCTTGCCCTTTGCTGCGAGTATGATTAATGAAT
TGCACATGCTTTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_3132 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59130.1	494	0.0	protein\|proline-rich family protein, putative, expressed
Brachypodium v1_2	Bradi2g52770.1	499	0.0
Arabidopsis v10	AT2G26770.1	496	1e-176	plectin-related \| chr2:11404257-11407743 REVERSE LENGTH=496