barSeed - Barley Seed Development Database

Probe CUST_5319_PI390587928

Source Contig U35_3135

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5319_PI390587928	Hv_44K_v2	GAGAACTCTGCTGTGTGTACAGAAATGCAAACAGCCTTGATATTGTTTGTCATCAAAAAA	1298	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.849	1.911	1.014	0.867	0.399	0.507
Raw	1021.741	1648.745	765.934	1029.926	167.392	228.847

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16711.1	1631	3e-21	1481 - 1534	100	54 / 54	plus	ABC08023
JLOC1	JLOC1_11531.1	1643	2e-21	1481 - 1534	100	54 / 54	plus
Harvest21	ABC08023	1366	6e-22	1299 - 1358	97	58 / 60	plus	ABC08023
Harvest35	U35_3135	1366	3e-25	1299 - 1358	100	60 / 60	plus

Contig Sequence (1366 bp)

>U35_3135 1366 Hv_44K_v2
GGAAACAAAACGACGGGGCGGAGACGAGACGCGTCCCGTTCGCGCACGCTACTCGATTGA
TTGCTTCCTTCCGCCCGCTGCTCCGCTGCCGCCACAGCTCCTCCCTCCTCCTCCTGCTCG
AGTCCCCCGGTGCCCTAGCCAGCCCGCTGCCACTGGCGGCGAGCGAGAGTCCGGATCGCG
GGCGCCGCGCCGCTCCTTCCCCTCCCCTACCGGAGGGAGACCCCGCCGAGGATCGAGGAC
CGGCCGGCCGCGGAATGGGCGGCCGCGATGACTAGCGGGGGTCGCGCGGCGGCGTTGTTG
GCGGAGGCAGCGGGGCGCATACCATGGTGCAGTGTCTCGACGGCGTCAAGCACCTCCTCG
CGGTCCTCTTCAAGTGCTGCGACCTCGAGCTCAAGCAGCCCCGGGGGCTCGAGGACCCCC
AGGTCCTCGCGCGGGAGACCGTCTTCAGCGTGAGCGAGGTCGAGGCGCTGTACGAGCTCT
TCAAGAAGATCAGCAGCGCCGTCATCGATGACGGGCTGATTAACAAGGAGGAGTTCCAGT
TGGCGCTCTTCAAGACGAGCAAGAAGGAGAGCCTCTTCGCTGATCGTGTATTCGATTTGT
TCGACACAAAGCACAATGGAATTTTAGGGTTTGAAGAGTTTGCTCGTGCACTCTCAGTGT
TTCACCCAAATGCTTCAGTTGAAGAGAAAATTGACTTTTCATTCCAGCTATATGATCTTA
AGCAACAAGGCTTCATTGAGAGACAAGAGGTTAAGCAGATGGTTGTTGCCACACTTGCGG
AGTCAGGAATGAATCTGTCTGATGAAATTATAGAGAACATAATTGATAAGACGTTTGAGG
AGGCAGACACAAAGCATGATGGAAAAATTGACAGGGAAGAGTGGCACAATCTGGTTCTTC
GACATCCTTCTTTACTGAAGAACATGACTCTTCAGTATCTCAAGGACATCACCACGACAT
TTCCAAGCTTCGTCTTTCATTCTCAGGTCGACGATACCTGAAATTCTTGCAGTTCTTTCG
AATCGGAACATAAGAAGATAAGCTTGCAGTAATTTTGTAAGGTTTTGGCATCGGACTGTT
TGGAACATTGGATCGGATGAGAGATAGAGGCATTGCTGCTCTGAAGGATGTTGAATTTGA
GAACGCAAATTGTTGTTAAATAACTTTGCTTCTTCCATTTGAAGAATTTAGAACTGTTGG
GAGCCTTCGGGCAAGGTGTTATCTCTTATCTGAAATTCCCATTTTCTCCTCTCCCCGTTT
TTGTTTTTTGGCTGGTTAGCGATCAGGTCCAATTCTCTGAGAACTCTGCTGTGTGTACAG
AAATGCAAACAGCCTTGATATTGTTTGTCATCAAAAAAAAAAAAAA

Homology of Contig U35_3135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g40510.1	226	5e-148	protein\|calcineurin B, putative, expressed
Brachypodium v1_2	Bradi4g02740.1	226	5e-149
Arabidopsis v10	AT4G26570.2	230	1e-133	\| Symbols: ATCBL3, CBL3 \| calcineurin B-like 3 \| chr4:13408608-13409998 REVERSE LENGTH=230