barSeed - Barley Seed Development Database

Probe CUST_5314_PI390587928

Source Contig U35_3140

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5314_PI390587928	Hv_44K_v2	ATAGACTGGCAGCAATGGCAGGATCGTTGGTGATAATAAAGGTTGAGCTTTACCAAAAAA	1188	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.698	1.813	1.074	0.794	0.363	0.373
Raw	5084.097	8433.477	4402.877	5271.560	837.551	921.527

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375253	3467	3e-21	1289 - 1342	100	54 / 54	plus	ABC09716 ABC38951
MLOC	MLOC_18028.1	2275	3e-21	1453 - 1506	100	54 / 54	minus	ABC09716 ABC38951
MLOC	MLOC_18028.2	1534	3e-21	774 - 827	100	54 / 54	minus	ABC09716 ABC38951
JLOC1	JLOC1_12460.1	1463	2e-21	641 - 694	100	54 / 54	minus
JLOC1	JLOC1_12459.1	1605	2e-21	770 - 823	100	54 / 54	plus
Harvest21	ABC09716	1219	3e-25	1149 - 1208	100	60 / 60	plus	ABC09716
Harvest35	U35_3140	1260	3e-25	1189 - 1248	100	60 / 60	plus

Contig Sequence (1260 bp)

>U35_3140 1260 Hv_44K_v2
TCGAGCACTGTTGGCCTACTATGTGTCAACCCAATCACTCCTCCCCCCTCCCACTCCTCA
CCCACGGCGAGGAGACGGACAGGCCCGCCGCTGCTGCACCGTCCGGCAGGGGTTGCCTTG
ATCCCTTCCTCCACTATCGATGGGGGACATTGCCAAGGACTTGACAGCCGGAACCGTCGG
AGGGATCGCTAATCTGGTTGTTGGCCACCCATTTGACACCATCAAGGTCAAGCTCCAGAG
CCAGCCCAGCCCTGCTCCAGGCCAGCTACCTAAGTATGCGGGCGCCTTTGATGCTGTCAA
GCAAACAGTTGCGGCTGAAGGGCCGAGGGGATTGTATAAGGGAATGGGGGCTCCTCTCGC
TACCGTCGCAGCCTTCAACGCTCTCCTGTTCACTGTGAGGGGCCAAATGGAGGCTCTCTT
GAGATCGGAGCCTGGGGTGCCATTGACAGTTAAGCAGCAGGTTGTCGCTGGTGCTGGTGC
CGGGCTTGCGGTCTCCTTCCTGGCATGCCCAACAGAGCTGATTAAGTGCAGGTTGCAGGC
CCAGAGCTCTTTAGCTGAAGCAGGTGCTGTCTCCGGCGTGGCGCTTCCCAAAGGGCCAAT
GGATGTGGCAAGGCATGTCATAAGGGACGCCGGCTTCAAAGGACTGTTCAAGGGCATCGT
CCCGACAATGGGCCGTGAGATCCCCGGCAACGCCATAATGTTCGGTGTGTACGAGGCCGT
CAAGCAGTACATGGCCGGCGGCCGGGACACGTCAGGCCTCGGCCAGGGCTCTCTCATCCT
CGCCGGGGGGCTCGCCGGAGGGGCGCTGTGGCTCACGGTGTACCCGACCGACGTCGTCAA
GAGCGTGATCCAGGTGGACGACTACAAGAAGCCGAGGTACTCCGGGTCGATCGACGCGGT
CAAGAAGATCGTCGCGGCCGACGGGGTCAAGGGCCTGTACAAGGGGTTCGGCCCCGCCAT
GGCCCGCAGCGTCCCGGCAAATGCCGCCACCTTCGTGGCCTACGAGATCACGCGGTCGGC
CATGGGCTGACTGACCCAAGGTCCTGGCGCCGCCCTCCGTTTCTTCTCCGACGCGGCTGA
AGCGGCATTAAGCGGAGCAACTGAGACAGAATTGGGATCCATGGCAGACAAAAGAAAGGA
AAAATTAACCATTCTTCTTTGCTGCGACATTGTTTCTCAGAACCTCGCATAGACTGGCAG
CAATGGCAGGATCGTTGGTGATAATAAAGGTTGAGCTTTACCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3140 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42299.3	297	4e-163	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi3g34090.1	297	1e-168
Arabidopsis v10	AT5G46800.1	300	5e-134	\| Symbols: BOU \| Mitochondrial substrate carrier family protein \| chr5:18988779-18989810 REVERSE LENGTH=300