barSeed - Barley Seed Development Database

Probe CUST_5296_PI390587928

Source Contig U35_3787

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5296_PI390587928	Hv_44K_v2	GAAATTACATTGCGACTGAACCGGGTGAGGAGTTGTGGAAATAATTTGTCTGGGACCGTT	1017	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248853.1	886	2e-24	791 - 850	100	60 / 60	plus	ABC08601
MLOC	AK249698.1	901	2e-24	842 - 901	100	60 / 60	plus	ABC08601
MLOC	MLOC_74751.1	843	2e-24	589 - 648	100	60 / 60	plus	ABC08601
JLOC1	JLOC1_49838.1	849	8e-25	559 - 618	100	60 / 60	plus
Harvest21	ABC08601	1100	3e-25	1019 - 1078	100	60 / 60	plus	ABC08601
Harvest35	U35_3787	1099	3e-25	1018 - 1077	100	60 / 60	plus

Contig Sequence (1099 bp)

>U35_3787 1099 Hv_44K_v2
GTGGCGTGCGCGGTTCGTGCGCCTACCATTTGCGCCCATCCAGGTGCATGCACCGTCCCG
GCGTCCCGTCCCTCCCTCTGCACTTTCCTCTGCAACCACGCCTCCCCCGCCTGCTACCCC
TGGCTTTGCTCCCAAGCGAAGCCAAAGTAAACCTTCACCCGTACGGCAAGAGGCGACGCC
GGGGGCCAATCTACGGGCACCAGATCGCGGAGGAGCCTGCCGTCTCCTGCCCATTCTCCG
CAAAGGTCTCCAGAGTCATGAGATGCAAGCTCATTTGATTTTTTATATGTTCAACAAGCA
CTGAAGTATTTTCCTCGATGGAGGCTGAAGCTGCTTTCGATGTTGAAGATTCCAGATCAA
ACGATGAACTGCAGGAGTTGTGGCCAGTTGGTGAGATAGACCCAAAGAGAGGGCGATTCC
CTTGTTGCATTGTCTGGACTCCTCTTCCTGTAGTTTCATGGCTTGCTCCTTACATAGGCC
ATGTTGGAATCTGTCAGGAGGATGGATCTGTCCTGGATTTTGCTGGTTCAAATTTTGTGA
GCATGGATAATTTTGCATATGGTTCTGTCGCTAGATACCTCCAGCTGGACAGAAAGAAGT
GCTGCTTTCCTGCTAATCTGGGGGCACATGTATGCGAGTCGACGTACAAGCACACAGAAG
TTGGAACAGCAACATCCTGGGATAGTACCTTGCAACTGGGCACAAGACATTTCCAGCACA
AATACTACAACCTGTTCACCTGCAACTGTTACTCATTCGTAGCAAACTGCCTGAACCGGC
TTGCCCACGGCGGTTCGGCGGAGTGGAATGTTTTGAATGTGGCAGCTCTTGTCTGGCTTC
ACGGCGAATGGGTGGACAAAATGTCTGTCGTTCGGTCATTCGCGCCATTCGTGACTGTGA
CGTGCATCGGTATTTTTATGGCCGGCTGGTCTTTCCTAATAGGGTTATCGGCATTCTGTT
TGCTTCTGATAGGGTGGTTCGTCTTTGCTGTATACTGCACGAAAGGTTTGGTGTGCTGAA
ATTACATTGCGACTGAACCGGGTGAGGAGTTGTGGAAATAATTTGTCTGGGACCGTTGAT
CCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3787 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51430.1	242	5e-146	protein\|green ripe-like, putative, expressed
Brachypodium v1_2	Bradi2g48020.1	234	3e-152
Arabidopsis v10	AT2G26070.1	250	1e-107	\| Symbols: RTE1 \| Protein of unknown function (DUF778) \| chr2:11105741-11106607 REVERSE LENGTH=250