barSeed - Barley Seed Development Database

Probe CUST_5295_PI390587928

Source Contig U35_3788

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5295_PI390587928	Hv_44K_v2	ATTTTGCATATGGTTCTGTCGCTAGATACCTCCAGCTGGACAGAAAGAAGTGCTGCTTTC	412	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.011	1.204	1.985	2.295	0.369	0.629
Raw	19.051	37.946	51.505	95.991	3.877	9.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248853.1	886	2e-24	323 - 382	100	60 / 60	plus	ABC08601
MLOC	AK249698.1	901	2e-24	374 - 433	100	60 / 60	plus	ABC08601
Harvest21	ABC08603	995	3e-25	476 - 535	100	60 / 60	minus
Harvest21	ABC08602	547	3e-25	413 - 472	100	60 / 60	plus
Harvest21	ABC08601	1100	3e-25	551 - 610	100	60 / 60	plus	ABC08601
Harvest35	U35_3788	547	3e-25	413 - 472	100	60 / 60	plus
Harvest35	U35_3787	1099	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_3788 547 Hv_44K_v2
GCGCCCATCCAGGTGCATGCACCGTCCCGGCGTCCCGTCCCTCCCTCTGCACTTTCCTCT
GCAACCACGCCTCCCCCTGCCTGCTACCCCTGGCTTTGCTCCCAAGCGAAGCCAAAGTAA
ACCTTCACCCGTACGGCAAGAGGCGACGCCGGGGGCCAATCTACGGGCACCAGATCGCGG
AGGAGCCTGCCGTCTCCTGCCCATTCTCCGCAAAGGTCTCCAGAGTCATGAGATGCAAGC
TCATTTGATTTTTTATATGTTCAACAAGCACTGAAGTATTTTCCTCGATGGAGGCTGAAG
CTGCTTTCGATGTTGAAGATTCCAGATCAAACGATGAACTGCAGGAGTTGTGGCCAGTTG
GAGGATGGATCCGTCCTGGATTTTGCTGGTTCAAATTTTGTGAGCATGGATAATTTTGCA
TATGGTTCTGTCGCTAGATACCTCCAGCTGGACAGAAAGAAGTGCTGCTTTCCTGCTAAT
CTGGGGGGCACATGTATGCGAGTCGACGTACAAGCACACAGAAGTTGGAACAGCAACATC
CTGGGAT

Homology of Contig U35_3788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None