barSeed - Barley Seed Development Database

Probe CUST_5294_PI390587928

Source Contig U35_3789

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5294_PI390587928	Hv_44K_v2	CATGGACTTGACACCTCAAGGAGGTGAAGTTCCATATCCAAGCTACTTAAACACAAAAAA	951	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.161	0.295	0.788	1.540	1.316	2.050
Raw	70.649	207.932	477.852	1443.326	434.613	739.093

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72045.2	1024	3e-22	23 - 78	100	56 / 56	minus	ABC09119 ABC09120
JLOC1	JLOC1_47923.4	1260	1e-22	959 - 1014	100	56 / 56	plus
JLOC1	JLOC1_47923.3	1245	1e-22	944 - 999	100	56 / 56	plus
Harvest21	ABC09120	950	3e-25	11 - 70	100	60 / 60	minus	ABC09120
Harvest35	U35_3789	1021	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (1021 bp)

>U35_3789 1021 Hv_44K_v2
TCGAGCACTGTTGGCCTTACTGGAAAACTAGCAACGGAGCAGAGAGGCGAGAGAGGGGAG
TCAAAGATAAACACGAGCAGCCGGAGGATAGCCTGCCTGCGCGGCTGCGACGACTTATTT
CCCGGCGATGTCGGCGGCGCAGGCTGCGAGCGCCATCTCGCGGCCGTCCGCGAGTGCGCG
GCTCAGGGTAGCTGCGTTCTTCACCGATAATCACAACCCCGGCCCGGCGCGCCTCTGCAT
CCGACGACTCAGTGCGGAGAGAATCTTTGCAGGGGTTCAAATTGCAGCCTCCAACTTCAA
CAGATCCAGAATTTGCCATGTTAAAAGTGGGGATGCTGATGGCTATCCAAAAACTGAAGA
CGAGTTAGCTGACGAAGAAACCCTTCAGCGTAATTTGGACAGGGCTATCCGGGAAGAAGA
TTATGCCCGTGCTGCCAAAATCCGGGATGATCTGCACGTCCTCCATGAGGATACTGAAGC
TTCCGTCCTTGCAGCAAATACACGATTCTACAACGCTTTCAAGAATGGAGATTTTACTGC
AATGAACTCTATCTGGGCTAAAGGAGACTATGTGTATGTTGTCCATCCTGGGGCAGGTCG
GATATCCGGTTACGATGTGGTCTTGCAAAGCTGGGAGATGGTTTGCAACGCGGATTATGA
GTTCCCTCTAAACATTGAGCTTAAGAACATAGAGGTTCATGTGCGTGGTGACCTTGGTTA
TGTTACATGCTTGGAGTTGGTTAAGACCAAAGGAAAATCTTGGGGGAAGCAAATTGCCAC
CAACGTCTTCGAGAAGATAGATGGCACATGGTATATTTGCATTCACCATGCTTCACACAT
CGAAGAATAAAATGCTGACACTTTCTGGTGGTTTATGCTGTATATTACATAGCCGTTGGC
GTTATATGCCATCTTGGGTTATATTATATATGACTGGAATTTACTATTGCTCATGGACTT
GACACCTCAAGGAGGTGAAGTTCCATATCCAAGCTACTTAAACACAAAAAAAAAAAAAAA
A

Homology of Contig U35_3789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54960.1	243	4e-123	protein\|expressed protein
Brachypodium v1_2	Bradi2g50100.1	242	2e-126
Arabidopsis v10	AT3G09250.2	246	2e-59	Nuclear transport factor 2 (NTF2) family protein \| chr3:2839488-2840585 FORWARD LENGTH=246