barSeed - Barley Seed Development Database

Probe CUST_5290_PI390587928

Source Contig U35_3793

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5290_PI390587928	Hv_44K_v2	GATCATGAATTCTAGAATGCTTTCGGTTTCAATTCAAGAACTCTAGCTTGTTTACCTGCA	930	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.837	1.973	1.111	0.835	0.344	0.433
Raw	2091.370	3560.069	1748.867	2138.443	293.574	409.380

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54675.1	2597	3e-22	1 - 56	100	56 / 56	minus	ABC08986
JLOC1	JLOC1_35198.2	2400	8e-25	2215 - 2274	100	60 / 60	plus
JLOC1	JLOC1_35198.1	2579	8e-25	2394 - 2453	100	60 / 60	plus
Harvest21	ABC08986	1006	3e-25	931 - 990	100	60 / 60	plus	ABC08986
Harvest35	U35_3793	1004	3e-25	931 - 990	100	60 / 60	plus

Contig Sequence (1004 bp)

>U35_3793 1004 Hv_44K_v2
CACTCCGCACATCCTCTCCGTCAAGGCCGGCGAGGATGTTGCTTCAAAAATAATGTCCTT
CTCACAGCAAGGACCTCGCACAGTTTGCATTCTTTCAGCAAATGGCGCAATAAGCAATGT
AACACTTCGGCAGCCAGCTACATCTGGTGGACTGGTGACTTACGAGGGTCGATTTGAGAT
CATCTCCCTATCTGGTTCATTCCTGCTTGCAGAAGATGGTGATACTCGTAGCAGGACTGG
TGGATTGAGCGTTGCACTTGCAGGATCTGATGGCCGGGTTCTCGGTGGATGTGTAGCTGG
GCAGCTAACGGCTGCGACACCTGTTCAGGTTGTCGTGGCTAGTTTCATAGCCGAAGGTAA
AAAATCAAAGCCTGCTGAGCCACGGAAGGTTGAACCGATGTCCGCACCTCCACAGATGGC
CACCTATGTGCCAGCTCCAGTGGCTAGCCCTCCCTCGGAGGGTACATCCAGCGCATCATC
CGATGACTCTGGCAGCCCCATCAACCACGGTGGGATGCCCTACAACCACTCTGGTGGGCA
GCAGCACCAGCAGCAGCACATGCCCCCTGCGTACGCATCCGGCGGCTGGTCGCTCTCGGC
GCACCATCAGAACAACAACAGGCACGATGCAGACATGAAGATGATGTCGAACTAACACCG
TGTGCTCGGCCTTTGAGGAGAGCCCCATTTGTTGGCTGGGCTGGAGAGGAGCTGGTACTG
CTGTAACGTCTGCCGTCGACCAGCAATGGCCGACCTGGTAGCTAGGAGATTTAGGTTCTT
GCTCTCTGGCATGCTGTTTTTCCCTAAGTAAGATTAATTTTAGCCGCCGTCTGTAATGCT
GTAGCTCTCGCTGTCGCTAACGTGAGTTTTTATCTTCATGGTCATGTACCTGCTGAGATT
TTCACCTCCTAGGCTAGGCGTTCTTCTGTGGATCATGAATTCTAGAATGCTTTCGGTTTC
AATTCAAGAACTCTAGCTTGTTTACCTGCAAAAAAAAAAAAAAA

Homology of Contig U35_3793 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42230.1	406	1e-114	protein\|AT hook motif domain containing protein, expressed
Brachypodium v1_2	Bradi3g34030.1	434	3e-118
Arabidopsis v10	None