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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_528_PI415269222Hv_44K_v2GAGTGGAGCGAGCAACTATATATTGCTGGTGCGGCTAGTTTTCTTGGAGCATAATATATG826GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 3.0463.5411.3170.5370.1540.158
Raw 2265.8604111.0631312.720874.84784.74795.056



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3674258809e-22801 - 8629760 / 62plus ABC13015
MLOCMLOC_56636.28889e-22741 - 8029760 / 62plus ABC13015
MLOCMLOC_56635.17369e-22576 - 6379760 / 62plus ABC13015
MLOCMLOC_56636.113549e-221194 - 12559760 / 62plus ABC13015
JLOC1JLOC1_36656.113745e-221036 - 10979760 / 62plus
Harvest21ABC130159212e-22825 - 8869760 / 62plusABC13015
Harvest35U35_196389212e-22825 - 8869760 / 62plus



Contig Sequence (886 bp)

>TA41960_4513 886 Hv_44K_v2
TTCTACTTCCCTCCATCAGCTCGCCATCATTCACACACCACCGCATGCAGTAGGCAGTAG
CCACACTCCACTGCCATCGCTCTCACGCACACACAGCATCACCGGCTTACCTACACGGCA
CTCCCGTCGCTCTCAGCTGCCATGGCGTCCTACAGGCTGCTGGTCATCCTCGTCTTCTCC
GCGCCGCTCCTCGACGCCGCAGCCGCCGACACCTCCTACCAGGCCGACTGCCCCTACCCG
TGCCTGCTGCCGCCGCCCACGCCGCCGGCCTCCACCGCCGACTGCCCGCCGCCGCCCTCC
GCGCCGTCCGGCTCCGGCTACGGGTACCCGCCCCCGTCCTCCTCCGGGAACGCGCCGCCG
TCGCCCTCGTACTGGAACAACCCTCCGCCCTCCGGCGGCTACATTCCCGGCTACTACCAG
CCTCCCTCCGGCGGGGGTGGCGGAAGAGGCGGAGGCGGTGGAGGAGGTGGCGGGAACTAC
AGGCCGGCGCCGCCCCCGCCCAACCCGATCCTGCCGTGGTACCCATGGTACTACCGGTCC
CCGCCGTCCTCATCCGCGGTGGCAACAACGGGGAGCGCGTGGGCGGCCGTGTTCTGCTTG
GTGGCCGCCGTAACTGCCGCTGCTGCTCTCGTCGGTTACTAGTACGGTCATCATCGATCA
GTTACTAGCTATACTTTCAGTTCGTAGTCCATCAATTCTTCATATATACTTGATGTATAA
GATAATGGGGTGCCATTATTATTAGCCATGCATAATATCTACTAGTATCCATCGATGGTA
GTACTCCCTACATATTGATTCATTGCTCAGTTGGCTTTTGGGTGGTGAGTGGAGCGAGCA
ACTATATATTGCTGGTGCGGCTAGTTTTCTTGGAGCATAATATATG



Homology of Contig TA41960_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None